CassavaBase

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- Analyses & Models
- Breeder Tools
- Selection Index
- Genomic Selection (solGS)
- Genomic Prediction of Parent Combinations
- Population Structure (PCA)
- Clustering
- Kinship & Inbreeding
- Correlation
- Stability AMMI/GGE
- Heritability
- Accession Usage
- Mixed Models
- Compare Trials
- Graphical Filtering
- BoxPlotter Tool
- GWAS
- Image Analysis
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- HapMap Jbrowse
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- Ontology Browser
- Compose a New Trait
Maps
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Available Maps

Interactive Maps

[Submit New Map]

Cassava 2011: Cassava 2011
Cassava GBS consensus map: Cassava GBS consensus map
new cassava merged map: new cassava merged map

Comparative Maps

Interactive comparative map viewer: View two chromosomes from two different maps at the same time; it displays the relationships between the chromosomes and additional information such as associated physical map, inbred lines, and rulers.

Examples:

Tomato EXPEN 1992 vs Potato TXB 1992
Tomato EXPEN 2000 vs Eggplant-LXM 2002
Potato TXB 1992 vs Eggplant-LXM 2002

Compare entire maps: To get a better view how two (or three) maps relate to each other, take a zoomed out view of the entire map. A maximum of 3 maps can be shown together at one time. The maps to be displayed can be selected on the top of the display.

Examples:

Tomato EXPEN 1992 vs Potato TXB 1992
Eggplant LXM 2002 vs Tomato EXPEN 1992 vs Potato TXB 1992 (three-way comparison)

For more on the comparative map viewer, read the help page.

Static Maps

Tomato maps
L. esculentum x L. pennellii maps:
Tomato - Arabidopsis synteny map
Pepper SNU2 map
Isogenic Line (IL) map
Lycopersicon pimpinellifolium Inbred Backcross Lines (IBLs)

Your Lists

Public Lists

List Contents

List Validation Report: Failed

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Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

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Dataset Contents

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Working

Progress

NextGen Cassava

NextGen Cassava Breeding project promises to substantially increase the rate of genetic improvement in cassava breeding and unlock the full potential of cassava, a staple crop central to food security and livelihoods across Africa.

College of Agriculture and Life Sciences, Cornell University, USA
National Crops Resources Research Institute (NaCRRI), Uganda
National Root Crops Research Institute (NRCRI), Nigeria
International Institute of Tropical Agriculture (IITA), Nigeria
Boyce Thompson Institute (BTI) for Plant Research, USA
US Department of Energy (DOE) Joint Genome Institute (JGI), USA
Makerere University, Uganda

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Available Maps

NextGen Cassava

Project Partners