#!/bin/bash

(Rscript  /home/production/cxgn/sgn/R/solgwas/solgwas_script.R /home/production/volume/tmp/solgwas_files/solgwas_download_uOopd_phenotype.txt /home/production/volume/tmp/solgwas_files/solgwas_download_uOopd_genotype.txt storage.root.periderm.color.visual.rating.1-4 /home/production/volume/tmp/solgwas_files/solgwas_download_uOopd_storage_root_periderm_color_visual_rating_1-4_figure3.png /home/production/volume/tmp/solgwas_files/solgwas_download_uOopd_storage_root_periderm_color_visual_rating_1-4_figure4.png 0 0 /home/production/volume/tmp/solgwas_files/solgwas_download_uOopd_storage_root_periderm_color_visual_rating_1-4_gwasresults_pheno.csv;

perl /home/production/cxgn/sgn/bin/record_finish_timestamp.pl -H db8.sgn.cornell.edu -D cxgn_cassava -U web_usr -P sol@ley! -j 544 ;

) > /home/production/volume/tmp/solgwas_files/job_wdLK7C/out 2> /home/production/volume/tmp/solgwas_files/job_wdLK7C/err