#!/bin/bash

(Rscript  /home/production/cxgn/sgn/R/solgwas/solgwas_script.R /home/production/volume/tmp/solgwas_files/solgwas_download_4zk54_phenotype.txt /home/production/volume/tmp/solgwas_files/solgwas_download_4zk54_genotype.txt central.leaf.shape.visual.rating.1-10 /home/production/volume/tmp/solgwas_files/solgwas_download_4zk54_central_leaf_shape_visual_rating_1-10_figure3.png /home/production/volume/tmp/solgwas_files/solgwas_download_4zk54_central_leaf_shape_visual_rating_1-10_figure4.png 0 0 /home/production/volume/tmp/solgwas_files/solgwas_download_4zk54_central_leaf_shape_visual_rating_1-10_gwasresults_pheno.csv;

FINISH_TIMESTAMP=$(date +"%Y-%m-%d %H:%M:%S%z"); 
echo "369    $FINISH_TIMESTAMP" >> /home/production/volume/logs/job_finish.log ;

) > /home/production/volume/tmp/solgwas_files/job_lt0XSN/out 2> /home/production/volume/tmp/solgwas_files/job_lt0XSN/err