#!/bin/bash

(Rscript  /home/production/cxgn/sgn/R/solgwas/solgwas_script.R /home/production/volume/tmp/solgwas_files/solgwas_download_4agsC_phenotype.txt /home/production/volume/tmp/solgwas_files/solgwas_download_4agsC_genotype.txt storage.root.size.visual.rating.1-7 /home/production/volume/tmp/solgwas_files/solgwas_download_4agsC_storage_root_size_visual_rating_1-7_figure3.png /home/production/volume/tmp/solgwas_files/solgwas_download_4agsC_storage_root_size_visual_rating_1-7_figure4.png 0 0 /home/production/volume/tmp/solgwas_files/solgwas_download_4agsC_storage_root_size_visual_rating_1-7_gwasresults_pheno.csv;

FINISH_TIMESTAMP=$(date +"%Y-%m-%d %H:%M:%S%z"); 
echo "358    $FINISH_TIMESTAMP" >> /home/production/volume/logs/job_finish.log ;

) > /home/production/volume/tmp/solgwas_files/job_X3qcbJ/out 2> /home/production/volume/tmp/solgwas_files/job_X3qcbJ/err