#!/bin/bash

(Rscript  /home/production/cxgn/sgn/R/solgwas/solgwas_script.R /home/production/volume/tmp/solgwas_files/solgwas_download_Cu2X5_phenotype.txt /home/production/volume/tmp/solgwas_files/solgwas_download_Cu2X5_genotype.txt root.number.per.plot.counting /home/production/volume/tmp/solgwas_files/solgwas_download_Cu2X5_root_number_per_plot_counting_figure3.png /home/production/volume/tmp/solgwas_files/solgwas_download_Cu2X5_root_number_per_plot_counting_figure4.png 0 0 /home/production/volume/tmp/solgwas_files/solgwas_download_Cu2X5_root_number_per_plot_counting_gwasresults_pheno.csv;

FINISH_TIMESTAMP=$(date +"%Y-%m-%d %H:%M:%S%z"); 
echo "330    $FINISH_TIMESTAMP" >> /home/production/volume/logs/job_finish.log ;

) > /home/production/volume/tmp/solgwas_files/job_WjGiul/out 2> /home/production/volume/tmp/solgwas_files/job_WjGiul/err