#!/bin/bash

(Rscript  /home/production/cxgn/sgn/R/solgwas/solgwas_script.R /home/production/volume/tmp/solgwas_files/solgwas_download_2R27N_phenotype.txt /home/production/volume/tmp/solgwas_files/solgwas_download_2R27N_genotype.txt fresh.storage.root.weight.per.plot /home/production/volume/tmp/solgwas_files/solgwas_download_2R27N_fresh_storage_root_weight_per_plot_figure3.png /home/production/volume/tmp/solgwas_files/solgwas_download_2R27N_fresh_storage_root_weight_per_plot_figure4.png 0 0 /home/production/volume/tmp/solgwas_files/solgwas_download_2R27N_fresh_storage_root_weight_per_plot_gwasresults_pheno.csv;

FINISH_TIMESTAMP=$(date +"%Y-%m-%d %H:%M:%S%z"); 
echo "335    $FINISH_TIMESTAMP" >> /home/production/volume/logs/job_finish.log ;

) > /home/production/volume/tmp/solgwas_files/job_Ol27UP/out 2> /home/production/volume/tmp/solgwas_files/job_Ol27UP/err