#!/bin/bash

(Rscript  /home/production/cxgn/sgn/R/solgwas/solgwas_script.R /home/production/volume/tmp/solgwas_files/solgwas_download_0eTGv_phenotype.txt /home/production/volume/tmp/solgwas_files/solgwas_download_0eTGv_genotype.txt initial.vigor.assessment.1-7 /home/production/volume/tmp/solgwas_files/solgwas_download_0eTGv_initial_vigor_assessment_1-7_figure3.png /home/production/volume/tmp/solgwas_files/solgwas_download_0eTGv_initial_vigor_assessment_1-7_figure4.png 0 0 /home/production/volume/tmp/solgwas_files/solgwas_download_0eTGv_initial_vigor_assessment_1-7_gwasresults_pheno.csv;

FINISH_TIMESTAMP=$(date +"%Y-%m-%d %H:%M:%S%z"); 
echo "342    $FINISH_TIMESTAMP" >> /home/production/volume/logs/job_finish.log ;

) > /home/production/volume/tmp/solgwas_files/job_IHp_tr/out 2> /home/production/volume/tmp/solgwas_files/job_IHp_tr/err