package SGN::View::Mason::Commands;
use strict;
use vars qw($m $c);
HTML::Mason::Component::FileBased->new(
'code' => sub {
use utf8; local $SGN::View::Mason::Commands::m = $HTML::Mason::Commands::m;
$m->debug_hook( $m->current_comp->path ) if ( HTML::Mason::Compiler::IN_PERL_DB() );

#line 1 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '
' );
#line 5 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '
<style type="text/css">
    @import url("/css/icon_nav.css");

    div.page_introduction {
        margin-bottom: 0;
    }

    #icon_nav {
        width: 720px;
        height: 500px;
        position: relative;
    }

    .SNPTool {
    	position: relative; 
    	top: 100px;
    	left: 50px;
    }

    .SNPToolSubMenu {
    	background-image: url(../images/MapsMarkersSub.png);
    	width: 227px;
    	height: 341px;
    	padding-top: 15px;
    	position: relative;
    	top: 0px;
    	left: 0px;
    	z-index: 1;
    }   
   

    .Markers {
    	position: relative; 
    	top: 110px;
    	left: 400px;
    }

    .MarkersSubMenu {
    	background-image: url(../images/MapsMarkersSub.png);
    	width: 227px;
    	height: 341px;
    	padding-top: 15px;
    	position: relative;
    	top: 0px;
    	left: 0px;
    }


    .Phenotypes {
    	position: relative; 
    	top: 20px;
    	left: -30px;
    }

    .TraitsSubMenu {
    	background-image: url(../images/MapsMarkersSub.png);
    	width: 227px;
    	height: 341px;
    	padding-top: 15px;
    	position: relative;
    	top: 0px;
    	left: 0px;
    }


    .QTLTool {
    	position: relative; 
    	top: 170px;
    	left: 120px;
    }

    .QTLToolSubMenu {
    	background-image: url(../images/MapsMarkersSub.png);
    	width: 227px;
    	height: 341px;
    	padding-top: 15px;
    	position: relative;
    	top: 0px;
    	left: 0px;
    	z-index: 1;
    }
    
    .Genes { 
        position: relative;
        top: 10px;
        left: 130px;
    }



</style>

' );
#line 98 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->comp(   '/page/page_title.mas', title=>'SGN Breeders Toolbox'   
); #line 98 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '
 
<div class="page_introduction">
<p>The purpose of this page is to give breeders direct links to
breeder-relevant tools and data on SGN. It is a work in progress and
your feedback or suggestions are welcome to build this into a
comprehensive, easy to use and breeder-friendly resource.</p>

<p>We love feedback!  Please contact <a href="mailto:jv27\\@cornell.edu">Joyce van Eck</a>
with suggestions for improvements!</p>
</div>

<div id="icon_nav">
<ul>

	
    
	<li class="SNPTool"><!-- a href="#" --><img src="/img/breedericonmenu/SNPTool.png" alt="SNP Tool" title="SNP Tool (coming soon)" ><!-- /a -->
    	<!--
		<ul>
            <div class="SNPToolSubMenu">
                <li><a href="#">Test...1</a></li>
                <li><a href="#">Test...2</a></li>
                <li><a href="#">Test...3</a></li>
            </div>
        </ul>
        -->
	</li>
    
     <li class="Markers"><a href="/search/direct_search.pl?search=markers"><img src="/img/breedericonmenu/Markers.png" alt="Markers" title="Maps &amp; Markers"  /></a>
    	<!--
		<ul>
            <div class="MarkersSubMenu">
            	<li><a href="#">Test...1</a></li>
                <li><a href="#">Test...2</a></li>
                <li><a href="#">Test...3</a></li>
            </div>
        </ul>
        -->
	</li>
	

	<li class="Phenotypes"><a href="/search/direct_search.pl?search=phenotypes"><img src="/img/soliconmenu/Phenotypes.png" alt="Traits" title="Traits &amp; Phenotypes" /></a>
    	<!--
		<ul>
            <div class="TraitsSubMenu">
            	<li><a href="#">Test...1</a></li>
                <li><a href="#">Test...2</a></li>
                <li><a href="#">Test...3</a></li>
            </div>
        </ul>
        -->
	</li>
    
	<li class="QTLTool"><a href="/search/direct_search.pl?search=qtl"><img src="/img/breedericonmenu/QTLTool.png" alt="QTL Tool" title="Access QTL data" /></a>
    	<!--
   		<ul>
            <div class="QTLToolSubMenu">
                <li><a href="#">Test...1</a></li>
                <li><a href="#">Test...2</a></li>
                <li><a href="#">Test...3</a></li>
            </div>
        </ul>
        -->
	</li>

		<li class="Genes"><a href="/search/direct_search.pl?search=loci"><img src="/img/soliconmenu/Genes.png" alt="Genes" title="Genes" ></a>
    	<!--
		<ul>
            <div class="SNPToolSubMenu">
                <li><a href="#">Test...1</a></li>
                <li><a href="#">Test...2</a></li>
                <li><a href="#">Test...3</a></li>
            </div>
        </ul>
        -->
	</li>


</ul>
</div>


' );
#line 181 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->comp( { content => sub {
#line 181 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '
<ul>
  <li>The SGN Breeders Toolbox <a href="http://www.extension.org/pages/61208">webinar</a> by Joyce Van Eck</li>
  <li>Plant Breeding and Genomics at the <a href="http://www.extension.org/plant_breeding_genomics">eXtension</a> site</li>
  <li>Tomato Genome Browser <a href="http://www.extension.org/article/32485">Webinar</a> presented at the 2010 Tomato Disease Workshop by <a href="mailto:merk.9@osu.edu">Heather Merk</a></li>
  <li>Designing a CAPS Marker From a SNP Using The <a href="http://www.extension.org/article/32361">SGN CAPS Designer</a> by <a href="mailto:merk.9@osu.edu">Heather Merk</a></li>
 <li>A voiceover Powerpoint <a href="http://www.extension.org/pages/60317/sgn-marker-search-tool-tutorial-for-plant-breeders">tutorial for the "Markers" tool </a> by <a href="mailto:merk.9@osu.edu">Heather Merk</a></li>
</ul>
' );
#line 189 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
} }, '/page/info_section.mas', title=>'Tutorials'
 );
#line 189 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '

' );
#line 191 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->comp( { content => sub {
#line 191 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '
<ul>
  <li>Browse the SGN <a href="/search/direct_search.pl?search=markers/">Markers database</a></li>
  <li>Browse available controlled vocabularies using the SGN <a href="/tools/onto/">Ontology browser</a></li>
  <li>Develop CAPS markers using the <a href="/tools/caps_designer/caps_input.pl">CAPS Designer</a></li>
  <li>Check intron locations in transript data using the <a href="/tools/intron_detection/find_introns.pl">Intron Finder</a></li>
  <li><a href="/phenome/qtl_form.pl">QTL data submssion</a> and on-the-fly QTL analysis <a href="/search/direct_search.pl?search=qtl/">for Solanaceae traits</a></li>
  <li>SGN gene and phenotype <a href="/phenome/">submission guide</a> </li>
</ul>
' );
#line 200 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
} }, '/page/info_section.mas', title=>'SGN tools'
 );
#line 200 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '

' );
#line 202 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->comp( { content => sub {
#line 202 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '
<ul><li>SNP discovery tool. This will be part of the <a href="https://www.msu.edu/~douchesd/solcapwebpage.htm">SolCAP</a> project.</li></ul>
' );
#line 204 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
} }, '/page/info_section.mas', title=>'Tools in development'
 );
#line 204 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '

' );
#line 206 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->comp( { content => sub {
#line 206 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '
<ul>
<li><b>Potato</b>
 <ul>
  <li><a href="/organism/Solanum_tuberosum/genome">Potato genome</a></li>
  <li><a href="https://spreadsheets.google.com/spreadsheet/ccc?key=0AglmOi1fE8ZYdEtWaUV3S1FzUjNFVmt4X29fNU9HLXc&hl=en_US">Potato marker list</a> (work in progres by David Douches)</li>
 </ul>
</li>
<li><b>Tomato</b>
 <ul>
  <li><a href="/organism/Solanum_lycopersicum/genome">Tomato genome</a></li>
  <li><a href="https://spreadsheets.google.com/spreadsheet/ccc?key=0AglmOi1fE8ZYdE9RU0dlS2h4S29RMk1ZQXk4aUJBOGc&hl=en_US">Tomato resistance genes </a> (by Douglas Maxwell).</li>
 </ul>
</li>
<li><a href="http://www.tomatomap.net/">TomatoMap.Net</a> - a site for Tomato Genetics at Ohio State University.</li>
<li><a href="http://solcap.msu.edu/">SolCAP</a> - the official SolCAP website at Michigan State University.</li>
<li><a href="http://www.oardc.ohio-state.edu/vanderknaap/tomato_analyzer.htm">Tomato Analyzer</a> - software for scoring fruit shape and other shapes.</li>
<li><a href="/help/index.pl#submit">Submitting data to SGN</a> - instruction for data submissions to SGN.</li>
</ul>
' );
#line 225 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
} }, '/page/info_section.mas', title=>'Links'
 );
#line 225 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '


' );
#line 228 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->comp(   '/util/import_javascript.mas', classes => [qw[ icon_nav ]]   
); #line 228 "/home/production/cxgn/sgn/mason/breeders_toolbox/index.mas"
$m->print( '

' );
;return;
},
'load_time' => 1763139224,

)
;