BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: cassava-v7.fasta
           899 sequences; 669,368,850 total letters



Query= Untitled_sequence

Length=55
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Chromosome12                                                          89.8    2e-17


>Chromosome12 
Length=36115694

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 53/55 (96%), Gaps = 1/55 (2%)
 Strand=Plus/Plus

Query  1         TTATCTTAATAATTTTAGGAAGCTAAGGATCCGCTTGTGAAGGCTGTTCTACATG  55
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  11064488  TTATC-TAATAATTTTAGGAAGCTAAGGATCCGCTTGTGAAGGCTGTTCTAGATG  11064541



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 20749765494


  Database: cassava-v7.fasta
    Posted date:  Oct 21, 2019  4:05 PM
  Number of letters in database: 669,368,850
  Number of sequences in database:  899



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5