Index of /ftp/marnin_datasets/implementGMSinCassava/output/
../
Cassava_HMII_V3_Marning_imputation_6-18-21.samples 02-Aug-2021 13:18 180454
IITA_CleanedTrialData_2021May10.rds 02-Aug-2021 13:15 12315627
IITA_ExptDesignsDetected_2021May10.rds 02-Aug-2021 13:13 12826670
IITA_blupsForModelTraining_twostage_asreml_2021..> 02-Aug-2021 13:18 9485602
IITA_trials_NOT_identifiable.csv 02-Aug-2021 13:16 8442
README.md 02-Aug-2021 13:15 42
alphaAssignOutput_iita_pedigree.txt.dams 02-Aug-2021 13:15 704284
alphaAssignOutput_iita_pedigree.txt.dams.full 02-Aug-2021 13:18 1381541
alphaAssignOutput_iita_pedigree.txt.pedigree 02-Aug-2021 13:15 681555
alphaAssignOutput_iita_pedigree.txt.pedigree.top 02-Aug-2021 13:18 884777
alphaAssignOutput_iita_pedigree.txt.sires 02-Aug-2021 13:18 702985
alphaAssignOutput_iita_pedigree.txt.sires.full 02-Aug-2021 13:18 1379713
crossValPredsA.rds 02-Aug-2021 13:11 2717579
crossValPredsAD.rds 02-Aug-2021 13:11 4689190
cvAD_1rep_markerEffects.rds 02-Aug-2021 13:18 114211626
cvAD_1rep_meanPredAccuracy.rds 02-Aug-2021 13:12 385510
cvAD_1rep_parentfolds.rds 02-Aug-2021 13:12 135125
cvAD_1rep_predAccuracy.rds 02-Aug-2021 13:12 2493407
cvAD_1rep_predMeans.rds 02-Aug-2021 13:11 276751
cvAD_1rep_predVars.rds 02-Aug-2021 13:15 927620
cvAD_1rep_varPredAccuracy.rds 02-Aug-2021 13:12 2107648
cvAD_5rep5fold_markerEffects.rds 02-Aug-2021 13:16 574755552
cvAD_5rep5fold_meanPredAccuracy.rds 02-Aug-2021 13:13 988006
cvAD_5rep5fold_parentfolds.rds 02-Aug-2021 13:15 665414
cvAD_5rep5fold_predAccuracy.rds 02-Aug-2021 13:13 11514079
cvAD_5rep5fold_predMeans.rds 02-Aug-2021 13:15 929140
cvAD_5rep5fold_predVars.rds 02-Aug-2021 13:11 4593337
cvAD_5rep5fold_varPredAccuracy.rds 02-Aug-2021 13:15 10526273
cvDirDom_1Mb_50kb_pt5_predAccuracy.rds 04-Aug-2021 17:01 12496994
cvDirDom_1Mb_50kb_pt6_predAccuracy.rds 04-Aug-2021 17:02 12451286
cvDirDom_1Mb_50kb_pt8_predAccuracy.rds 04-Aug-2021 17:02 12452880
cvDirDom_1Mb_50kb_pt9_predAccuracy.rds 04-Aug-2021 17:01 12453434
cvDirDom_5rep5fold_markerEffects.rds 02-Aug-2021 13:19 1039663030
cvDirDom_5rep5fold_meanPredAccuracy.rds 02-Aug-2021 13:15 1932729
cvDirDom_5rep5fold_parentfolds.rds 02-Aug-2021 13:15 665414
cvDirDom_5rep5fold_predAccuracy.rds 02-Aug-2021 13:12 12453629
cvDirDom_5rep5fold_predMeans.rds 02-Aug-2021 13:15 1408556
cvDirDom_5rep5fold_predVars.rds 02-Aug-2021 13:11 7947723
cvDirDom_5rep5fold_varPredAccuracy.rds 02-Aug-2021 13:15 10521055
cvMeanPredAccuracyA.rds 02-Aug-2021 13:12 991827
cvMeanPredAccuracyAD.rds 02-Aug-2021 13:13 1941809
cvPredMeansA.rds 02-Aug-2021 13:15 933990
cvPredMeansAD.rds 02-Aug-2021 13:15 1418644
cvVarPredAccuracyA.rds 02-Aug-2021 13:18 5325313
cvVarPredAccuracyAD.rds 02-Aug-2021 13:18 10668111
estimateSelectionError.rds 02-Aug-2021 13:16 12789709
genomicMatePredictions_top121parents_ModelAD.csv 02-Aug-2021 13:13 28975132
genomicMatePredictions_top121parents_ModelAD.rds 02-Aug-2021 13:11 14620312
genomicMatePredictions_top121parents_ModelDirDo..> 02-Aug-2021 13:18 28857240
genomicMatePredictions_top121parents_ModelDirDo..> 02-Aug-2021 13:15 19181820
genomicPredictions_ModelAD.csv 02-Aug-2021 13:18 4168088
genomicPredictions_ModelAD.rds 02-Aug-2021 13:15 12960875
genomicPredictions_ModelDirDom.csv 02-Aug-2021 13:15 4154593
genomicPredictions_ModelDirDom.rds 02-Aug-2021 13:18 23310394
kinship_A_IITA_2021May13.rds 02-Aug-2021 13:13 491539426
kinship_D_IITA_2021May13.rds 02-Aug-2021 13:15 491809014
kinship_domGenotypic_IITA_2021July5.rds 02-Aug-2021 13:18 491743113
kinships_LDpruningSeries_2021Aug02.qs 04-Aug-2021 17:12 3599915922
markEffsTest.rds 02-Aug-2021 13:12 3003034
markerEffects.rds 02-Aug-2021 13:12 298634494
markerEffectsA.rds 02-Aug-2021 13:13 407878476
markerEffectsAD.rds 02-Aug-2021 13:15 669039165
maxNOHAV_byStudy.csv 02-Aug-2021 13:13 113729
obsCrossMeansAndVars.rds 02-Aug-2021 13:16 122923389
parentfolds.rds 02-Aug-2021 13:13 666365
ped2check_genome.rds 02-Aug-2021 13:15 275450
ped2genos.txt 02-Aug-2021 13:16 386428
pednames2keep.txt 02-Aug-2021 13:12 146909
pednames_Prune100_25_pt25.log 02-Aug-2021 13:18 2178
pednames_Prune100_25_pt25.nosex 02-Aug-2021 13:16 636194
pednames_Prune100_25_pt25.prune.in 02-Aug-2021 13:18 32106
pednames_Prune100_25_pt25.prune.out 02-Aug-2021 13:11 791293
potential_dams.txt 02-Aug-2021 13:16 265442
potential_sires.txt 02-Aug-2021 13:11 264035
predVarTest.rds 02-Aug-2021 13:18 891555
samples2keep_IITA_2021May13.txt 02-Aug-2021 13:16 203411
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt5.log 04-Aug-2021 17:02 2162
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt5.nosex 04-Aug-2021 17:01 636194
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt5.pru..> 04-Aug-2021 17:01 89436
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt5.pru..> 04-Aug-2021 17:02 733963
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.log 04-Aug-2021 17:02 2162
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.nosex 04-Aug-2021 17:01 636194
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.pru..> 04-Aug-2021 17:01 114496
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.pru..> 04-Aug-2021 17:01 708903
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt7.log 04-Aug-2021 17:02 2162
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt7.nosex 04-Aug-2021 17:01 636194
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt7.pru..> 04-Aug-2021 17:01 145343
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt7.pru..> 04-Aug-2021 17:01 678056
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.log 04-Aug-2021 17:01 2166
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.nosex 04-Aug-2021 17:01 636194
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.pru..> 04-Aug-2021 17:01 184238
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.pru..> 04-Aug-2021 17:02 639161
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt9.log 04-Aug-2021 17:01 2174
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt9.nosex 04-Aug-2021 17:02 636194
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt9.pru..> 04-Aug-2021 17:01 247649
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt9.pru..> 04-Aug-2021 17:02 575750
samples2keep_IITA_MAFpt01_prune50_25_pt98.log 02-Aug-2021 13:15 2280
samples2keep_IITA_MAFpt01_prune50_25_pt98.nosex 02-Aug-2021 13:12 636194
samples2keep_IITA_MAFpt01_prune50_25_pt98.prune.in 02-Aug-2021 13:15 418864
samples2keep_IITA_MAFpt01_prune50_25_pt98.prune..> 02-Aug-2021 13:13 395701
samples2keep_notInPHGdb.txt 02-Aug-2021 13:18 30380
stdcvDirDom_1Mb_50kb_pt5_predAccuracy.rds 04-Aug-2021 17:01 78186944
stdcvDirDom_1Mb_50kb_pt6_predAccuracy.rds 04-Aug-2021 17:02 78034300
stdcvDirDom_1Mb_50kb_pt8_predAccuracy.rds 04-Aug-2021 17:02 78031431
stdcvDirDom_1Mb_50kb_pt9_predAccuracy.rds 04-Aug-2021 17:02 78033884
stdcv_AD_predAccuracy.rds 02-Aug-2021 13:11 78030276
stdcv_DirDom_predAccuracy.rds 02-Aug-2021 13:12 78027114
test_cvAD_markerEffects.rds 02-Aug-2021 13:15 4185766
test_cvAD_meanPredAccuracy.rds 02-Aug-2021 13:15 811
test_cvAD_parentfolds.rds 02-Aug-2021 13:15 26281
test_cvAD_predAccuracy.rds 02-Aug-2021 13:13 1501
test_cvAD_predMeans.rds 02-Aug-2021 13:15 570
test_cvAD_predVars.rds 02-Aug-2021 13:12 615
test_cvAD_varPredAccuracy.rds 02-Aug-2021 13:13 978
top50crosses.csv 04-Aug-2021 17:01 11660
verified_ped.txt 02-Aug-2021 13:18 277851