PLINK v1.90b3.30 64-bit (27 Jan 2016) Options in effect: --bfile /home/jj332_cas/marnin/IITA_EA_2020/output/chr4_ImputationReferencePanel_StageVI_91119 --keep-allele-order --out /home/jj332_cas/marnin/IITA_EA_2020/output/chr4_ImputationReferencePanel_StageVI_91119 --recode A --recode-allele /home/jj332_cas/marnin/IITA_EA_2020/output/chr4_ImputationReferencePanel_StageVI_91119.alleleToCount Hostname: cbsurobbins.biohpc.cornell.edu Working directory: /home/jj332_cas/marnin/IITA_EA_2020 Start time: Wed Nov 11 21:09:41 2020 Random number seed: 1605146981 515677 MB RAM detected; reserving 257838 MB for main workspace. 3422 variants loaded from .bim file. 15015 people (0 males, 0 females, 15015 ambiguous) loaded from .fam. Ambiguous sex IDs written to /home/jj332_cas/marnin/IITA_EA_2020/output/chr4_ImputationReferencePanel_StageVI_91119.nosex . Using 1 thread (no multithreaded calculations invoked. Before main variant filters, 15015 founders and 0 nonfounders present. Calculating allele frequencies... done. 3422 variants and 15015 people pass filters and QC. Note: No phenotypes present. --recode A to /home/jj332_cas/marnin/IITA_EA_2020/output/chr4_ImputationReferencePanel_StageVI_91119.raw ... done. End time: Wed Nov 11 21:09:42 2020