Index of /ftp/marnin_datasets/IITA_2021GS/output/
../
BeagleLogs/ 11-Aug-2021 13:44 -
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:41 341M
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:35 2M
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:37 862K
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:37 392M
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:35 1702
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:37 657K
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:33 1M
AllChrom_RefPanelAndGSprogeny_ReadyForGP_2021Au..> 11-Aug-2021 13:40 694M
CrossesToPredict_2021Aug10.rds 11-Aug-2021 13:42 10K
IITA_CleanedTrialData_2021Aug08.rds 26-Aug-2021 12:44 13M
IITA_ExptDesignsDetected_2021Aug08.rds 26-Aug-2021 12:44 14M
IITA_blupsForModelTraining_twostage_asreml_2021..> 11-Aug-2021 13:37 9M
IITA_trials_NOT_identifiable.csv 26-Aug-2021 12:44 8486
chr10_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:37 80K
chr10_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:37 280K
chr10_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:33 479
chr10_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:36 29K
chr10_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:41 3M
chr10_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:40 3M
chr10_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:36 28
chr10_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:36 29M
chr10_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:42 6131
chr11_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:41 91K
chr11_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:38 318K
chr11_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:36 479
chr11_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:36 32K
chr11_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:35 4M
chr11_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:35 3M
chr11_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:41 28
chr11_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:42 36M
chr11_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:33 7501
chr12_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:33 80K
chr12_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:33 278K
chr12_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:37 479
chr12_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:37 31K
chr12_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:33 3M
chr12_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:33 3M
chr12_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:35 28
chr12_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:36 32M
chr12_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:41 7292
chr13_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:35 79K
chr13_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:36 275K
chr13_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:38 479
chr13_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:35 29K
chr13_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:36 3M
chr13_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:38 3M
chr13_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:40 28
chr13_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:41 29M
chr13_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:33 6770
chr14_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:33 148K
chr14_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:35 514K
chr14_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:41 479
chr14_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:37 57K
chr14_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:42 5M
chr14_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:36 4M
chr14_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:33 28
chr14_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:35 49M
chr14_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:40 8416
chr15_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:33 106K
chr15_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:33 370K
chr15_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:38 479
chr15_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:35 38K
chr15_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:35 4M
chr15_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:38 3M
chr15_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:37 28
chr15_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:41 38M
chr15_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:33 7884
chr16_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:37 78K
chr16_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:41 271K
chr16_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:35 479
chr16_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:33 31K
chr16_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:33 3M
chr16_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:37 3M
chr16_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:33 28
chr16_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:33 35M
chr16_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:38 7113
chr17_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:40 81K
chr17_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:38 277K
chr17_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:33 479
chr17_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:38 30K
chr17_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:37 3M
chr17_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:33 2M
chr17_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:38 28
chr17_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:38 27M
chr17_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:33 6394
chr18_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:33 87K
chr18_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:37 305K
chr18_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:33 479
chr18_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:38 31K
chr18_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:40 3M
chr18_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:33 3M
chr18_RefPanelAndGSprogeny72719_SubsetAndReadyT..> 11-Aug-2021 13:37 28
chr18_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:37 33M
chr18_RefPanelAndGSprogeny_ReadyForGP_2021Aug08..> 11-Aug-2021 13:37 6871
chr1_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:33 218K
chr1_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:38 771K
chr1_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:33 477
chr1_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:41 80K
chr1_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:35 8M
chr1_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:37 7M
chr1_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:36 28
chr1_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:38 93M
chr1_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:41 13K
chr2_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:38 102K
chr2_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:35 368K
chr2_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:41 477
chr2_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:42 36K
chr2_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:33 5M
chr2_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:38 4M
chr2_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:40 28
chr2_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:33 42M
chr2_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:33 8799
chr3_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:36 110K
chr3_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:33 394K
chr3_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:38 477
chr3_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:33 38K
chr3_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:38 5M
chr3_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:36 4M
chr3_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:35 28
chr3_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:38 41M
chr3_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:42 9524
chr4_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:38 99K
chr4_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:33 354K
chr4_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:37 477
chr4_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:38 36K
chr4_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:38 4M
chr4_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:37 3M
chr4_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:37 28
chr4_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:33 36M
chr4_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:33 7539
chr5_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:37 107K
chr5_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:36 383K
chr5_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:38 477
chr5_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:33 38K
chr5_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:36 4M
chr5_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:33 4M
chr5_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:33 28
chr5_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:37 41M
chr5_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:38 9836
chr6_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:35 96K
chr6_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:37 339K
chr6_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:33 477
chr6_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:33 35K
chr6_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:33 4M
chr6_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:35 3M
chr6_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:38 28
chr6_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:33 36M
chr6_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:33 7847
chr7_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:33 54K
chr7_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:38 193K
chr7_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:36 477
chr7_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:40 17K
chr7_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:37 2M
chr7_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:40 2M
chr7_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:33 28
chr7_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:36 21M
chr7_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:40 4894
chr8_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:40 98K
chr8_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:40 349K
chr8_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:35 477
chr8_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:37 32K
chr8_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:41 4M
chr8_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:42 3M
chr8_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:33 28
chr8_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:41 36M
chr8_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:35 7189
chr9_DCas21_6038_WA_REFimputed.INFO 11-Aug-2021 13:37 92K
chr9_DCas21_6038_WA_REFimputed.hwe 11-Aug-2021 13:37 327K
chr9_DCas21_6038_WA_REFimputed.log 11-Aug-2021 13:33 477
chr9_DCas21_6038_WA_REFimputed.sitesPassing 11-Aug-2021 13:35 34K
chr9_DCas21_6038_WA_REFimputed.vcf.gz 11-Aug-2021 13:35 4M
chr9_DCas21_6038_WA_REFimputedAndFiltered.vcf.gz 11-Aug-2021 13:33 3M
chr9_RefPanelAndGSprogeny72719_SubsetAndReadyTo..> 11-Aug-2021 13:37 28
chr9_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:35 39M
chr9_RefPanelAndGSprogeny_ReadyForGP_2021Aug08...> 11-Aug-2021 13:38 8680
estimateErrorCov_byTrialType_asreml_2021Aug25.rds 26-Aug-2021 12:44 16M
estimateErrorCov_byTrialType_asreml_summary_202..> 26-Aug-2021 12:44 6334
estimateSelectionError.rds 26-Aug-2021 12:44 14M
estimateSelectionError_adjSIwts_2021Aug24.rds 26-Aug-2021 12:44 4M
estimateSelectionError_origSIwts_2021Aug24.rds 26-Aug-2021 12:44 4M
genomicMatePredictions_2021Aug10.csv 12-Aug-2021 14:14 84M
genomicMatePredictions_full_set_2021Aug10.rds 11-Aug-2021 13:33 7M
genomicMatePredictions_medium_set_2021Aug10.rds 12-Aug-2021 14:14 50M
genomicPredictions_full_set_2021Aug09.csv 11-Aug-2021 13:42 5M
genomicPredictions_full_set_2021Aug09.rds 11-Aug-2021 13:38 22M
genomicPredictions_medium_set_2021Aug09.rds 11-Aug-2021 13:33 13M
genomicPredictions_reduced_set_2021Aug09.rds 11-Aug-2021 13:35 10M
kinship_A_IITA_2021Aug09.rds 11-Aug-2021 13:35 573M
kinship_A_MediumSNPset_IITA_2021Aug09.rds 11-Aug-2021 13:42 573M
kinship_A_ReducedSNPset_IITA_2021Aug09.rds 11-Aug-2021 13:40 573M
kinship_Dgeno_IITA_2021Aug09.rds 11-Aug-2021 13:37 573M
kinship_Dgeno_MediumSNPset_IITA_2021Aug09.rds 11-Aug-2021 13:44 573M
kinship_Dgeno_ReducedSNPset_IITA_2021Aug09.rds 11-Aug-2021 13:35 573M
maxNOHAV_byStudy.csv 26-Aug-2021 12:44 112K
parentWiseCV_full_set_CrossPredAccuracy.rds 12-Aug-2021 14:14 13M
parentWiseCV_medium_set_CrossPredAccuracy.rds 11-Aug-2021 13:33 13M
parentWiseCV_reduced_set_CrossPredAccuracy.rds 12-Aug-2021 14:14 13M
parentsToPredictCrosses_2021Aug10.rds 11-Aug-2021 13:38 1511
ped2check_genome.rds 11-Aug-2021 13:37 307K
ped2genos.txt 26-Aug-2021 12:44 400K
pednames2keep.txt 11-Aug-2021 13:33 162K
pednames_Prune100_25_pt25.log 11-Aug-2021 13:42 2157
pednames_Prune100_25_pt25.nosex 11-Aug-2021 13:38 657K
pednames_Prune100_25_pt25.prune.in 11-Aug-2021 13:40 25K
pednames_Prune100_25_pt25.prune.out 11-Aug-2021 13:33 690K
samples2keep_IITA_2021Aug09.txt 11-Aug-2021 13:38 219K
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.log 11-Aug-2021 13:40 2257
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.nosex 11-Aug-2021 13:36 657K
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.pru..> 11-Aug-2021 13:36 98K
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt6.pru..> 11-Aug-2021 13:36 613K
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.log 11-Aug-2021 13:33 2259
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.nosex 11-Aug-2021 13:37 657K
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.pru..> 11-Aug-2021 13:33 156K
samples2keep_IITA_MAFpt01_prune1Mb_50kb_pt8.pru..> 11-Aug-2021 13:37 555K
samples2keep_IITA_MAFpt01_prune50_25_pt98.log 11-Aug-2021 13:36 2261
samples2keep_IITA_MAFpt01_prune50_25_pt98.nosex 11-Aug-2021 13:33 657K
samples2keep_IITA_MAFpt01_prune50_25_pt98.prune.in 11-Aug-2021 13:38 366K
samples2keep_IITA_MAFpt01_prune50_25_pt98.prune..> 11-Aug-2021 13:35 345K
siErrorVarEst_byTrialType_directApproach_2021Au..> 26-Aug-2021 12:44 1818
siErrorVarEst_byTrialType_indirectApproach_2021..> 26-Aug-2021 12:44 484
standardCV_full_set_ClonePredAccuracy.rds 11-Aug-2021 13:42 82M
standardCV_medium_set_ClonePredAccuracy.rds 11-Aug-2021 13:38 82M
standardCV_reduced_set_ClonePredAccuracy.rds 11-Aug-2021 13:40 82M
top50crosses.csv 26-Aug-2021 12:44 11K
verified_ped.txt 26-Aug-2021 12:44 285K