##fileformat=VCFv4.2
##filedate=20200830
##source="beagle.28Sep18.793.jar"
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated ALT Allele Frequencies">
##INFO=<ID=DR2,Number=1,Type=Float,Description="Dosage R-Squared: estimated squared correlation between estimated REF dose [P(RA) + 2*P(RR)] and true REF dose">
##INFO=<ID=IMP,Number=0,Type=Flag,Description="Imputed marker">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DS,Number=A,Type=Float,Description="estimated ALT dose [P(RA) + P(AA)]">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Estimated Genotype Probability">
#CHROM	POS	ID	REF	ALT
9	40368	S9_40368	C	T
9	81113	S9_81113	A	T
9	82430	S9_82430	T	C
9	84192	S9_84192	T	C
9	88258	S9_88258	T	G
9	100794	S9_100794	C	T
9	100801	S9_100801	G	C
9	101044	S9_101044	C	T
9	102042	S9_102042	T	G
9	102818	S9_102818	T	C
9	102839	S9_102839	A	T
9	118473	S9_118473	C	T
9	221752	S9_221752	T	A
9	221753	S9_221753	G	T
9	221754	S9_221754	A	G
9	224007	S9_224007	G	C
9	224020	S9_224020	T	C
9	232929	S9_232929	T	G
9	235846	S9_235846	T	C
9	235849	S9_235849	C	T
9	235853	S9_235853	T	A
9	374589	S9_374589	T	G
9	414065	S9_414065	T	C
9	414067	S9_414067	C	T
9	414088	S9_414088	G	T
9	414100	S9_414100	C	A
9	416008	S9_416008	G	A
9	416040	S9_416040	G	A
9	416138	S9_416138	A	C
9	416215	S9_416215	G	A
9	416226	S9_416226	A	C
9	416245	S9_416245	G	C
9	451607	S9_451607	A	G
9	451615	S9_451615	G	T
9	582757	S9_582757	C	G
9	582779	S9_582779	G	A
9	582825	S9_582825	C	T
9	585136	S9_585136	A	G
9	585274	S9_585274	C	G
9	596662	S9_596662	C	A
9	599632	S9_599632	C	T
9	605377	S9_605377	T	C
9	651418	S9_651418	T	A
9	658382	S9_658382	A	G
9	659632	S9_659632	G	A
9	659880	S9_659880	A	G
9	659923	S9_659923	T	C
9	659942	S9_659942	A	T
9	659950	S9_659950	G	C
9	716745	S9_716745	A	G
9	772225	S9_772225	C	T
9	772246	S9_772246	A	G
9	772261	S9_772261	A	G
9	781918	S9_781918	A	G
9	845161	S9_845161	C	A
9	911194	S9_911194	C	A
9	938254	S9_938254	C	T
9	938884	S9_938884	T	C
9	943818	S9_943818	T	G
9	944308	S9_944308	A	T
9	944325	S9_944325	A	T
9	970523	S9_970523	T	C
9	1295279	S9_1295279	C	T
9	1301148	S9_1301148	G	C
9	1375564	S9_1375564	T	A
9	1579366	S9_1579366	C	T
9	1598662	S9_1598662	A	T
9	1598808	S9_1598808	A	C
9	1663703	S9_1663703	C	A
9	1669702	S9_1669702	C	T
9	1669733	S9_1669733	C	G
9	1669945	S9_1669945	A	T
9	1770083	S9_1770083	C	T
9	1784066	S9_1784066	A	T
9	1785770	S9_1785770	A	G
9	1785839	S9_1785839	G	A
9	1790595	S9_1790595	C	T
9	2481677	S9_2481677	A	C
9	2481697	S9_2481697	C	T
9	2481700	S9_2481700	G	C
9	2481703	S9_2481703	C	G
9	2481706	S9_2481706	G	A
9	2481708	S9_2481708	A	G
9	2481717	S9_2481717	G	T
9	2481718	S9_2481718	A	C
9	2481719	S9_2481719	C	A
9	2481721	S9_2481721	C	G
9	2481722	S9_2481722	C	A
9	2481724	S9_2481724	G	C
9	2481727	S9_2481727	C	T
9	2481730	S9_2481730	C	G
9	2481731	S9_2481731	A	C
9	2482027	S9_2482027	A	C
9	2482140	S9_2482140	G	A
9	2482302	S9_2482302	G	T
9	2487930	S9_2487930	T	A
9	2490778	S9_2490778	A	T
9	2491562	S9_2491562	G	C
9	2491606	S9_2491606	T	G
9	2492332	S9_2492332	A	G
9	2492410	S9_2492410	C	T
9	2501343	S9_2501343	C	G
9	2513749	S9_2513749	T	G
9	2515721	S9_2515721	A	T
9	2515727	S9_2515727	C	A
9	2515855	S9_2515855	T	C
9	2515859	S9_2515859	T	C
9	2515910	S9_2515910	C	T
9	2516023	S9_2516023	C	T
9	2516075	S9_2516075	G	A
9	2516082	S9_2516082	G	A
9	2661166	S9_2661166	G	A
9	2829876	S9_2829876	T	A
9	3064393	S9_3064393	T	C
9	3065947	S9_3065947	G	A
9	3065959	S9_3065959	T	C
9	3066000	S9_3066000	G	T
9	3066645	S9_3066645	T	A
9	3077336	S9_3077336	A	G
9	3077460	S9_3077460	T	G
9	3109592	S9_3109592	G	T
9	3275993	S9_3275993	T	G
9	3464811	S9_3464811	C	A
9	3465359	S9_3465359	A	G
9	3465398	S9_3465398	T	A
9	3465503	S9_3465503	G	A
9	3466309	S9_3466309	A	C
9	3482516	S9_3482516	A	T
9	3482556	S9_3482556	G	C
9	3503639	S9_3503639	A	G
9	3665461	S9_3665461	G	A
9	3666537	S9_3666537	G	A
9	3743988	S9_3743988	G	A
9	4337781	S9_4337781	A	G
9	4338046	S9_4338046	C	T
9	4360603	S9_4360603	T	G
9	4409951	S9_4409951	G	A
9	4412205	S9_4412205	A	G
9	4418577	S9_4418577	A	G
9	4418947	S9_4418947	T	A
9	4427640	S9_4427640	C	T
9	4428174	S9_4428174	T	A
9	4428180	S9_4428180	A	C
9	4432904	S9_4432904	A	G
9	4433031	S9_4433031	G	A
9	4434776	S9_4434776	G	T
9	4434973	S9_4434973	T	G
9	4434976	S9_4434976	C	A
9	4434991	S9_4434991	A	G
9	4463441	S9_4463441	A	G
9	4463546	S9_4463546	G	A
9	4466183	S9_4466183	G	A
9	4466861	S9_4466861	A	C
9	4503602	S9_4503602	C	T
9	4505028	S9_4505028	A	T
9	4505030	S9_4505030	A	G
9	4525434	S9_4525434	T	C
9	4525499	S9_4525499	C	G
9	4533364	S9_4533364	A	G
9	4533389	S9_4533389	T	C
9	4533411	S9_4533411	C	T
9	4533415	S9_4533415	A	G
9	4533513	S9_4533513	A	G
9	4563672	S9_4563672	T	C
9	4563787	S9_4563787	A	T
9	4566021	S9_4566021	A	G
9	4566143	S9_4566143	A	C
9	4566172	S9_4566172	C	A
9	4577302	S9_4577302	C	T
9	4577365	S9_4577365	G	C
9	4577396	S9_4577396	A	T
9	4847521	S9_4847521	A	G
9	4847657	S9_4847657	T	C
9	4847739	S9_4847739	T	C
9	4867592	S9_4867592	G	A
9	5040942	S9_5040942	G	A
9	5040993	S9_5040993	T	A
9	5111174	S9_5111174	T	C
9	5111464	S9_5111464	G	T
9	5111507	S9_5111507	G	A
9	5183131	S9_5183131	A	G
9	5201289	S9_5201289	C	T
9	5202161	S9_5202161	G	T
9	5202220	S9_5202220	A	C
9	5202460	S9_5202460	T	C
9	5221521	S9_5221521	C	T
9	5266611	S9_5266611	T	G
9	5268141	S9_5268141	C	T
9	5268180	S9_5268180	T	C
9	5270374	S9_5270374	A	G
9	5281760	S9_5281760	C	T
9	5281772	S9_5281772	T	C
9	5303615	S9_5303615	C	T
9	5306473	S9_5306473	T	C
9	5347358	S9_5347358	C	T
9	5363619	S9_5363619	G	A
9	5384010	S9_5384010	G	A
9	5384024	S9_5384024	C	T
9	5393913	S9_5393913	T	C
9	5416722	S9_5416722	T	C
9	5418486	S9_5418486	G	C
9	5429436	S9_5429436	A	G
9	5438110	S9_5438110	A	T
9	5479473	S9_5479473	A	T
9	5511983	S9_5511983	A	G
9	5559674	S9_5559674	A	G
9	5559721	S9_5559721	A	T
9	5559752	S9_5559752	T	G
9	5560041	S9_5560041	G	T
9	5560691	S9_5560691	G	C
9	5564103	S9_5564103	T	A
9	5564105	S9_5564105	T	A
9	5564160	S9_5564160	A	G
9	5564201	S9_5564201	A	T
9	5564456	S9_5564456	G	T
9	5630830	S9_5630830	A	T
9	5630839	S9_5630839	G	A
9	5630957	S9_5630957	A	G
9	5639658	S9_5639658	T	A
9	5757933	S9_5757933	C	T
9	5830507	S9_5830507	G	T
9	6036784	S9_6036784	G	T
9	6188941	S9_6188941	A	G
9	6399508	S9_6399508	A	C
9	6399558	S9_6399558	G	C
9	6416185	S9_6416185	C	T
9	6419256	S9_6419256	A	G
9	6419315	S9_6419315	G	C
9	6655690	S9_6655690	T	C
9	6655726	S9_6655726	A	C
9	6660099	S9_6660099	T	G
9	6662874	S9_6662874	A	T
9	6813970	S9_6813970	A	C
9	6852093	S9_6852093	A	T
9	6854964	S9_6854964	A	T
9	6854965	S9_6854965	A	G
9	6878804	S9_6878804	G	C
9	6878819	S9_6878819	C	T
9	6880788	S9_6880788	T	C
9	6881539	S9_6881539	T	C
9	6881625	S9_6881625	A	C
9	6881647	S9_6881647	G	T
9	6883411	S9_6883411	A	G
9	6883420	S9_6883420	G	C
9	6883429	S9_6883429	G	C
9	6887834	S9_6887834	A	G
9	6890452	S9_6890452	A	G
9	6891231	S9_6891231	T	A
9	6891391	S9_6891391	G	A
9	6921588	S9_6921588	T	C
9	6921694	S9_6921694	T	A
9	6921776	S9_6921776	T	C
9	6996899	S9_6996899	T	G
9	6996980	S9_6996980	A	T
9	7039558	S9_7039558	C	A
9	7047673	S9_7047673	T	G
9	7050674	S9_7050674	C	A
9	7051911	S9_7051911	G	C
9	7052000	S9_7052000	A	T
9	7052019	S9_7052019	C	T
9	7053575	S9_7053575	T	A
9	7058886	S9_7058886	G	T
9	7061115	S9_7061115	T	C
9	7084529	S9_7084529	C	A
9	7088166	S9_7088166	A	G
9	7127310	S9_7127310	T	C
9	7332872	S9_7332872	A	T
9	7908183	S9_7908183	G	A
9	8087618	S9_8087618	C	A
9	8113063	S9_8113063	G	C
9	8120209	S9_8120209	G	A
9	8121747	S9_8121747	G	A
9	8121748	S9_8121748	G	A
9	8121853	S9_8121853	C	T
9	8123137	S9_8123137	C	A
9	8124660	S9_8124660	T	C
9	8124904	S9_8124904	G	A
9	8128150	S9_8128150	G	A
9	8128195	S9_8128195	T	C
9	8242026	S9_8242026	C	T
9	8263610	S9_8263610	G	A
9	8263614	S9_8263614	C	A
9	8266267	S9_8266267	T	G
9	8267723	S9_8267723	A	G
9	8275074	S9_8275074	G	A
9	8320595	S9_8320595	G	T
9	8320782	S9_8320782	G	A
9	8326256	S9_8326256	C	G
9	8587740	S9_8587740	T	A
9	8587805	S9_8587805	A	G
9	8591997	S9_8591997	G	A
9	8592995	S9_8592995	T	C
9	8594133	S9_8594133	C	T
9	8594194	S9_8594194	G	A
9	8594321	S9_8594321	A	G
9	8638951	S9_8638951	T	C
9	8638998	S9_8638998	G	A
9	8809341	S9_8809341	T	G
9	8812573	S9_8812573	C	A
9	8812608	S9_8812608	A	G
9	8812643	S9_8812643	C	G
9	8812656	S9_8812656	C	A
9	8812754	S9_8812754	C	G
9	8819776	S9_8819776	T	G
9	8821992	S9_8821992	T	G
9	8821998	S9_8821998	T	G
9	8822000	S9_8822000	G	C
9	8849385	S9_8849385	A	G
9	8931990	S9_8931990	G	A
9	8932113	S9_8932113	T	C
9	8938308	S9_8938308	C	A
9	8938389	S9_8938389	C	T
9	8938504	S9_8938504	G	A
9	8938710	S9_8938710	G	T
9	8938773	S9_8938773	G	A
9	8955230	S9_8955230	C	T
9	8955433	S9_8955433	T	C
9	8967169	S9_8967169	G	A
9	9047130	S9_9047130	C	G
9	9047139	S9_9047139	C	T
9	9130770	S9_9130770	T	C
9	9141526	S9_9141526	T	C
9	9164104	S9_9164104	C	T
9	9166298	S9_9166298	G	C
9	9188372	S9_9188372	A	G
9	9188411	S9_9188411	G	C
9	9188412	S9_9188412	A	T
9	9188487	S9_9188487	A	G
9	9230577	S9_9230577	C	A
9	9285538	S9_9285538	G	A
9	9536458	S9_9536458	C	T
9	9887674	S9_9887674	C	T
9	9887717	S9_9887717	A	T
9	9893593	S9_9893593	C	A
9	9895568	S9_9895568	T	C
9	9987914	S9_9987914	A	G
9	9999692	S9_9999692	A	G
9	10025795	S9_10025795	C	G
9	10026463	S9_10026463	C	G
9	10026894	S9_10026894	C	A
9	10029493	S9_10029493	C	A
9	10070383	S9_10070383	C	T
9	10076098	S9_10076098	T	C
9	10184437	S9_10184437	T	G
9	10424676	S9_10424676	A	T
9	10564794	S9_10564794	A	T
9	10564992	S9_10564992	A	G
9	10575740	S9_10575740	G	A
9	10577810	S9_10577810	A	G
9	10577933	S9_10577933	T	C
9	10749534	S9_10749534	A	T
9	10894442	S9_10894442	G	A
9	11086748	S9_11086748	G	A
9	11086761	S9_11086761	A	C
9	11086767	S9_11086767	C	T
9	11086799	S9_11086799	T	G
9	11086819	S9_11086819	G	A
9	11180562	S9_11180562	G	A
9	11352876	S9_11352876	G	A
9	11474895	S9_11474895	C	T
9	11474915	S9_11474915	T	G
9	11544257	S9_11544257	T	A
9	11595889	S9_11595889	T	C
9	12023917	S9_12023917	T	G
9	14209747	S9_14209747	T	A
9	14380094	S9_14380094	T	C
9	14393020	S9_14393020	C	T
9	14393651	S9_14393651	A	T
9	14394075	S9_14394075	C	T
9	14417904	S9_14417904	A	T
9	14417963	S9_14417963	A	T
9	14495601	S9_14495601	A	T
9	14499374	S9_14499374	G	T
9	14499375	S9_14499375	G	A
9	14499377	S9_14499377	C	A
9	14500897	S9_14500897	A	G
9	15695571	S9_15695571	A	G
9	16238480	S9_16238480	C	T
9	16241439	S9_16241439	C	T
9	16668983	S9_16668983	T	C
9	17621188	S9_17621188	T	C
9	19519802	S9_19519802	G	T
9	20118390	S9_20118390	C	T
9	20722517	S9_20722517	A	G
9	20855670	S9_20855670	A	G
9	20981221	S9_20981221	A	T
9	21376015	S9_21376015	A	G
9	21436967	S9_21436967	C	T
9	21477145	S9_21477145	G	A
9	21497726	S9_21497726	C	G
9	21497985	S9_21497985	G	A
9	21601185	S9_21601185	T	A
9	21601207	S9_21601207	G	A
9	21601252	S9_21601252	A	G
9	21601315	S9_21601315	C	T
9	21602038	S9_21602038	T	G
9	21602222	S9_21602222	A	G
9	21602227	S9_21602227	C	T
9	21602228	S9_21602228	A	G
9	21614123	S9_21614123	T	G
9	21619397	S9_21619397	C	T
9	21619649	S9_21619649	A	T
9	21630139	S9_21630139	G	A
9	21820531	S9_21820531	A	G
9	21875192	S9_21875192	C	G
9	21875209	S9_21875209	T	G
9	21880977	S9_21880977	G	A
9	21881028	S9_21881028	C	A
9	21910433	S9_21910433	C	T
9	22000055	S9_22000055	A	G
9	22000065	S9_22000065	A	C
9	22029982	S9_22029982	T	G
9	22030118	S9_22030118	C	T
9	22030271	S9_22030271	C	T
9	22335350	S9_22335350	A	G
9	22469043	S9_22469043	A	G
9	22555586	S9_22555586	C	A
9	22555632	S9_22555632	A	C
9	22555636	S9_22555636	G	T
9	22582408	S9_22582408	A	T
9	22582453	S9_22582453	C	T
9	22584418	S9_22584418	T	C
9	22672023	S9_22672023	C	G
9	22691231	S9_22691231	C	G
9	22699736	S9_22699736	A	C
9	22706197	S9_22706197	A	T
9	22706214	S9_22706214	C	T
9	22708538	S9_22708538	C	T
9	22735232	S9_22735232	G	A
9	22738851	S9_22738851	C	T
9	22740859	S9_22740859	A	C
9	22743407	S9_22743407	T	C
9	22749293	S9_22749293	A	C
9	22758486	S9_22758486	C	T
9	22758498	S9_22758498	C	T
9	22758506	S9_22758506	T	C
9	22760839	S9_22760839	T	C
9	22761009	S9_22761009	T	C
9	22777130	S9_22777130	G	T
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9	28758837	S9_28758837	T	G
9	28759906	S9_28759906	T	C
9	28759908	S9_28759908	C	T
9	28759909	S9_28759909	T	G
9	28760021	S9_28760021	C	T
9	28760617	S9_28760617	T	A
9	28760620	S9_28760620	T	C
9	28760628	S9_28760628	C	T
9	28762028	S9_28762028	T	G
9	28762173	S9_28762173	C	A
9	28762275	S9_28762275	A	G
9	28762337	S9_28762337	C	T
9	28762362	S9_28762362	A	T
9	28762401	S9_28762401	A	C
9	28762572	S9_28762572	A	G
9	28773656	S9_28773656	A	G
9	28798145	S9_28798145	T	C
9	28798167	S9_28798167	A	C
9	28805422	S9_28805422	T	G
9	28805443	S9_28805443	A	T
9	28805550	S9_28805550	T	C
9	28818361	S9_28818361	T	C
9	28818507	S9_28818507	C	G
9	28818575	S9_28818575	A	T
9	28818649	S9_28818649	A	T
9	28818657	S9_28818657	C	T
9	28818662	S9_28818662	C	G
9	28821819	S9_28821819	C	A
9	28821903	S9_28821903	G	C
9	28821930	S9_28821930	T	C
9	28840069	S9_28840069	A	C
9	28879783	S9_28879783	C	A
9	28879812	S9_28879812	T	C
9	28881043	S9_28881043	T	A
9	28881044	S9_28881044	T	G
9	28881175	S9_28881175	T	A
9	28892352	S9_28892352	G	T
9	28892367	S9_28892367	G	T
9	28898543	S9_28898543	C	T
9	28898677	S9_28898677	T	G
9	28901166	S9_28901166	G	A
9	28918931	S9_28918931	C	T
9	28918936	S9_28918936	C	T
9	28918966	S9_28918966	C	G
9	28918999	S9_28918999	G	T
9	28958829	S9_28958829	A	T
9	28984031	S9_28984031	T	A
9	28992312	S9_28992312	A	G
9	28993543	S9_28993543	C	G
9	29011045	S9_29011045	A	T
9	29011095	S9_29011095	A	G
9	29012928	S9_29012928	A	G
9	29013130	S9_29013130	T	A
9	29013137	S9_29013137	C	T
9	29013167	S9_29013167	G	A
9	29013194	S9_29013194	T	A
9	29015000	S9_29015000	C	A
9	29015046	S9_29015046	T	C
9	29016382	S9_29016382	A	G
9	29016398	S9_29016398	C	T
9	29016568	S9_29016568	A	C
9	29016901	S9_29016901	C	G
9	29017004	S9_29017004	T	C
9	29026230	S9_29026230	T	C
9	29039300	S9_29039300	G	C
9	29039304	S9_29039304	T	C
9	29039306	S9_29039306	T	G
9	29048413	S9_29048413	C	G
9	29048483	S9_29048483	T	G
9	29076807	S9_29076807	G	C
9	29076970	S9_29076970	T	C
9	29081445	S9_29081445	A	T
9	29081530	S9_29081530	A	G
9	29083389	S9_29083389	G	A
9	29086525	S9_29086525	T	C
9	29087667	S9_29087667	C	A
9	29125515	S9_29125515	G	C
9	29133059	S9_29133059	G	A
9	29133743	S9_29133743	G	T
9	29149797	S9_29149797	G	A
9	29170695	S9_29170695	C	T
9	29173305	S9_29173305	C	T
9	29173330	S9_29173330	C	A
9	29173388	S9_29173388	G	A
9	29195555	S9_29195555	T	A
9	29200314	S9_29200314	G	A
9	29224804	S9_29224804	G	A
9	29224813	S9_29224813	T	G
9	29224820	S9_29224820	T	G
9	29224953	S9_29224953	C	T
9	29270360	S9_29270360	G	C
9	29270450	S9_29270450	T	C
9	29273524	S9_29273524	A	G
9	29273578	S9_29273578	T	A
9	29279934	S9_29279934	G	A
9	29297479	S9_29297479	T	G
9	29297796	S9_29297796	T	C
9	29299452	S9_29299452	C	A
9	29318889	S9_29318889	T	C
9	29318911	S9_29318911	C	T
9	29319021	S9_29319021	C	G
9	29373127	S9_29373127	C	T