##fileformat=VCFv4.2
##filedate=20191027
##source="beagle.28Sep18.793.jar"
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated ALT Allele Frequencies">
##INFO=<ID=DR2,Number=1,Type=Float,Description="Dosage R-Squared: estimated squared correlation between estimated REF dose [P(RA) + 2*P(RR)] and true REF dose">
##INFO=<ID=IMP,Number=0,Type=Flag,Description="Imputed marker">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DS,Number=A,Type=Float,Description="estimated ALT dose [P(RA) + P(AA)]">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Estimated Genotype Probability">
#CHROM	POS	ID	REF	ALT
6	82218	S6_82218	A	C
6	82222	S6_82222	G	T
6	82229	S6_82229	G	A
6	82308	S6_82308	A	C
6	187790	S6_187790	T	G
6	219630	S6_219630	T	G
6	219653	S6_219653	T	C
6	219667	S6_219667	A	T
6	225380	S6_225380	G	A
6	225417	S6_225417	G	A
6	225432	S6_225432	T	A
6	225452	S6_225452	A	C
6	225454	S6_225454	A	G
6	225835	S6_225835	G	A
6	225882	S6_225882	C	A
6	233768	S6_233768	C	A
6	233783	S6_233783	C	T
6	233788	S6_233788	A	C
6	233792	S6_233792	T	C
6	233801	S6_233801	A	G
6	234944	S6_234944	C	A
6	303945	S6_303945	A	T
6	319692	S6_319692	A	G
6	319697	S6_319697	T	A
6	324448	S6_324448	G	A
6	324461	S6_324461	T	G
6	324488	S6_324488	A	T
6	324509	S6_324509	G	A
6	325263	S6_325263	G	T
6	340995	S6_340995	G	A
6	341011	S6_341011	T	A
6	341024	S6_341024	T	G
6	410666	S6_410666	T	G
6	421968	S6_421968	A	G
6	422601	S6_422601	G	A
6	424485	S6_424485	C	T
6	424785	S6_424785	C	T
6	424797	S6_424797	C	T
6	424812	S6_424812	G	A
6	424981	S6_424981	G	A
6	425000	S6_425000	C	T
6	430604	S6_430604	T	C
6	433028	S6_433028	T	C
6	468533	S6_468533	T	C
6	468563	S6_468563	A	G
6	476338	S6_476338	G	T
6	477882	S6_477882	C	T
6	477927	S6_477927	A	T
6	479227	S6_479227	T	C
6	479304	S6_479304	G	T
6	479512	S6_479512	T	G
6	479733	S6_479733	C	T
6	491965	S6_491965	A	G
6	492023	S6_492023	A	T
6	517059	S6_517059	A	G
6	517287	S6_517287	C	G
6	518735	S6_518735	T	A
6	548018	S6_548018	A	T
6	550099	S6_550099	C	T
6	550474	S6_550474	G	A
6	550537	S6_550537	T	G
6	550540	S6_550540	A	G
6	550549	S6_550549	T	C
6	550582	S6_550582	A	G
6	595636	S6_595636	C	T
6	595675	S6_595675	G	C
6	597527	S6_597527	G	C
6	601066	S6_601066	G	T
6	604555	S6_604555	G	A
6	621746	S6_621746	A	G
6	665804	S6_665804	G	C
6	678914	S6_678914	C	A
6	679014	S6_679014	A	T
6	679210	S6_679210	A	G
6	689243	S6_689243	C	T
6	689806	S6_689806	T	C
6	689991	S6_689991	A	G
6	690049	S6_690049	T	G
6	692629	S6_692629	A	G
6	695427	S6_695427	T	G
6	695523	S6_695523	T	C
6	695524	S6_695524	T	C
6	695527	S6_695527	C	T
6	735592	S6_735592	C	T
6	735614	S6_735614	C	T
6	735721	S6_735721	C	T
6	735724	S6_735724	G	T
6	735752	S6_735752	C	T
6	735760	S6_735760	C	T
6	811095	S6_811095	T	G
6	811115	S6_811115	G	A
6	812678	S6_812678	A	T
6	812685	S6_812685	G	A
6	828160	S6_828160	G	A
6	828296	S6_828296	T	A
6	836494	S6_836494	G	T
6	840380	S6_840380	G	T
6	844462	S6_844462	A	G
6	844477	S6_844477	T	C
6	844488	S6_844488	A	G
6	845798	S6_845798	C	A
6	845921	S6_845921	G	C
6	845929	S6_845929	G	A
6	845940	S6_845940	T	A
6	863639	S6_863639	C	T
6	863651	S6_863651	C	T
6	885705	S6_885705	C	T
6	885727	S6_885727	T	C
6	890913	S6_890913	C	A
6	890942	S6_890942	C	T
6	890944	S6_890944	T	C
6	891279	S6_891279	G	A
6	896518	S6_896518	A	C
6	930514	S6_930514	G	A
6	931818	S6_931818	C	T
6	932013	S6_932013	C	A
6	932074	S6_932074	G	C
6	940391	S6_940391	A	C
6	941945	S6_941945	A	G
6	946293	S6_946293	C	T
6	970112	S6_970112	T	C
6	970113	S6_970113	T	A
6	975152	S6_975152	T	C
6	984445	S6_984445	T	G
6	984492	S6_984492	A	T
6	984495	S6_984495	T	C
6	984521	S6_984521	G	A
6	984562	S6_984562	T	A
6	984615	S6_984615	G	A
6	984623	S6_984623	C	T
6	984635	S6_984635	A	G
6	984636	S6_984636	C	T
6	984669	S6_984669	C	T
6	996804	S6_996804	T	G
6	996954	S6_996954	T	A
6	1030586	S6_1030586	C	T
6	1033536	S6_1033536	A	G
6	1033548	S6_1033548	T	A
6	1033549	S6_1033549	C	A
6	1033551	S6_1033551	T	G
6	1033552	S6_1033552	T	G
6	1033556	S6_1033556	G	A
6	1055552	S6_1055552	C	T
6	1075217	S6_1075217	A	G
6	1075292	S6_1075292	A	G
6	1120839	S6_1120839	A	T
6	1162534	S6_1162534	C	T
6	1162605	S6_1162605	T	G
6	1163859	S6_1163859	C	A
6	1166859	S6_1166859	C	T
6	1166882	S6_1166882	C	T
6	1172120	S6_1172120	C	A
6	1173836	S6_1173836	G	A
6	1193058	S6_1193058	G	A
6	1193063	S6_1193063	T	A
6	1193255	S6_1193255	C	T
6	1214852	S6_1214852	G	C
6	1214938	S6_1214938	A	G
6	1228900	S6_1228900	T	C
6	1229038	S6_1229038	T	G
6	1229851	S6_1229851	C	T
6	1229908	S6_1229908	T	C
6	1235013	S6_1235013	T	C
6	1236438	S6_1236438	A	T
6	1236454	S6_1236454	A	G
6	1263354	S6_1263354	T	C
6	1269583	S6_1269583	A	G
6	1269722	S6_1269722	G	T
6	1269747	S6_1269747	C	A
6	1271109	S6_1271109	A	G
6	1290696	S6_1290696	T	C
6	1290739	S6_1290739	C	T
6	1315620	S6_1315620	T	A
6	1316094	S6_1316094	G	A
6	1316263	S6_1316263	C	A
6	1316765	S6_1316765	T	G
6	1317699	S6_1317699	G	A
6	1317725	S6_1317725	A	G
6	1317882	S6_1317882	T	C
6	1319041	S6_1319041	A	T
6	1319042	S6_1319042	C	A
6	1319086	S6_1319086	T	C
6	1323036	S6_1323036	C	T
6	1323059	S6_1323059	G	A
6	1358649	S6_1358649	A	G
6	1361335	S6_1361335	C	G
6	1378706	S6_1378706	C	T
6	1388128	S6_1388128	G	T
6	1398716	S6_1398716	C	G
6	1399125	S6_1399125	A	G
6	1433334	S6_1433334	C	A
6	1488105	S6_1488105	G	T
6	1488193	S6_1488193	T	A
6	1500471	S6_1500471	G	A
6	1500491	S6_1500491	T	C
6	1500518	S6_1500518	C	T
6	1500542	S6_1500542	A	G
6	1500546	S6_1500546	T	A
6	1500598	S6_1500598	A	G
6	1507839	S6_1507839	G	A
6	1510745	S6_1510745	C	T
6	1522677	S6_1522677	C	A
6	1522733	S6_1522733	G	T
6	1522775	S6_1522775	T	A
6	1524560	S6_1524560	G	T
6	1524725	S6_1524725	G	C
6	1534342	S6_1534342	T	C
6	1573218	S6_1573218	G	T
6	1604371	S6_1604371	G	A
6	1604377	S6_1604377	G	A
6	1604426	S6_1604426	G	A
6	1608792	S6_1608792	G	A
6	1608817	S6_1608817	G	A
6	1608823	S6_1608823	G	T
6	1796659	S6_1796659	A	G
6	1828190	S6_1828190	A	G
6	1828299	S6_1828299	A	T
6	1851176	S6_1851176	T	C
6	1851245	S6_1851245	C	T
6	1851247	S6_1851247	G	A
6	1851289	S6_1851289	G	A
6	1868400	S6_1868400	T	C
6	1868502	S6_1868502	G	A
6	1868522	S6_1868522	G	A
6	1868529	S6_1868529	G	T
6	1868602	S6_1868602	T	C
6	1868611	S6_1868611	T	G
6	1869366	S6_1869366	T	C
6	1869488	S6_1869488	G	T
6	1869520	S6_1869520	T	C
6	1870352	S6_1870352	C	G
6	1870431	S6_1870431	A	T
6	1875258	S6_1875258	C	G
6	1875478	S6_1875478	C	A
6	1875532	S6_1875532	A	T
6	1875680	S6_1875680	G	T
6	1875681	S6_1875681	C	G
6	1887646	S6_1887646	T	A
6	1945612	S6_1945612	G	T
6	1951181	S6_1951181	T	A
6	1952467	S6_1952467	A	T
6	1952592	S6_1952592	C	A
6	1955766	S6_1955766	G	T
6	1956254	S6_1956254	C	T
6	1956852	S6_1956852	C	T
6	1956920	S6_1956920	C	T
6	1956921	S6_1956921	T	C
6	1959443	S6_1959443	C	T
6	1960811	S6_1960811	G	A
6	1960820	S6_1960820	A	G
6	1992486	S6_1992486	A	G
6	2006591	S6_2006591	C	T
6	2006628	S6_2006628	G	T
6	2006646	S6_2006646	G	C
6	2007143	S6_2007143	G	A
6	2007147	S6_2007147	G	A
6	2007155	S6_2007155	C	A
6	2007175	S6_2007175	T	A
6	2008355	S6_2008355	A	G
6	2008481	S6_2008481	A	C
6	2008483	S6_2008483	A	T
6	2008719	S6_2008719	A	G
6	2008752	S6_2008752	G	T
6	2008754	S6_2008754	A	C
6	2050568	S6_2050568	T	C
6	2051451	S6_2051451	C	T
6	2051452	S6_2051452	G	T
6	2051477	S6_2051477	G	A
6	2051560	S6_2051560	G	T
6	2051578	S6_2051578	G	C
6	2052300	S6_2052300	A	G
6	2104773	S6_2104773	A	T
6	2104809	S6_2104809	G	A
6	2113002	S6_2113002	G	C
6	2113122	S6_2113122	G	A
6	2113145	S6_2113145	C	T
6	2113152	S6_2113152	A	C
6	2130568	S6_2130568	T	G
6	2135994	S6_2135994	T	A
6	2135995	S6_2135995	C	T
6	2136323	S6_2136323	T	C
6	2136351	S6_2136351	G	A
6	2136435	S6_2136435	C	G
6	2136448	S6_2136448	C	G
6	2260732	S6_2260732	T	G
6	2384748	S6_2384748	C	T
6	2418027	S6_2418027	T	A
6	2437171	S6_2437171	G	C
6	2437276	S6_2437276	G	T
6	2437320	S6_2437320	G	T
6	2458489	S6_2458489	A	C
6	2458495	S6_2458495	C	T
6	2473828	S6_2473828	A	T
6	2479868	S6_2479868	T	C
6	2479919	S6_2479919	C	T
6	2480999	S6_2480999	C	T
6	2481081	S6_2481081	G	T
6	2507262	S6_2507262	G	C
6	2507275	S6_2507275	A	G
6	2526106	S6_2526106	C	T
6	2546461	S6_2546461	T	C
6	2546484	S6_2546484	A	G
6	2546487	S6_2546487	T	A
6	2553615	S6_2553615	C	A
6	2553624	S6_2553624	G	A
6	2616212	S6_2616212	C	T
6	2616917	S6_2616917	A	G
6	2616919	S6_2616919	T	C
6	2619085	S6_2619085	A	G
6	2619091	S6_2619091	A	C
6	2619106	S6_2619106	T	C
6	2619239	S6_2619239	C	T
6	2619256	S6_2619256	T	G
6	2698060	S6_2698060	G	T
6	2698065	S6_2698065	C	T
6	2698080	S6_2698080	T	A
6	2698146	S6_2698146	T	C
6	2730684	S6_2730684	T	C
6	2735562	S6_2735562	C	T
6	2735611	S6_2735611	T	C
6	2735622	S6_2735622	T	C
6	2735623	S6_2735623	G	A
6	2736276	S6_2736276	G	C
6	2781976	S6_2781976	G	A
6	2782046	S6_2782046	C	A
6	2784248	S6_2784248	C	T
6	2784282	S6_2784282	G	A
6	2784288	S6_2784288	C	T
6	2784301	S6_2784301	C	A
6	2835922	S6_2835922	T	A
6	2854570	S6_2854570	A	G
6	2858388	S6_2858388	G	A
6	2871974	S6_2871974	A	G
6	2875999	S6_2875999	A	T
6	2889988	S6_2889988	G	T
6	2894410	S6_2894410	C	T
6	2895405	S6_2895405	A	G
6	2895417	S6_2895417	A	T
6	2910053	S6_2910053	A	G
6	2910144	S6_2910144	G	A
6	2910145	S6_2910145	T	C
6	2910147	S6_2910147	T	A
6	2910150	S6_2910150	G	A
6	2910160	S6_2910160	T	C
6	2963078	S6_2963078	G	A
6	3003233	S6_3003233	C	A
6	3038823	S6_3038823	G	C
6	3065211	S6_3065211	G	A
6	3190888	S6_3190888	A	T
6	3211742	S6_3211742	G	A
6	3211765	S6_3211765	C	G
6	3233014	S6_3233014	T	C
6	3233428	S6_3233428	G	A
6	3233503	S6_3233503	G	A
6	3233543	S6_3233543	C	T
6	3233576	S6_3233576	T	C
6	3233601	S6_3233601	C	T
6	3233625	S6_3233625	G	A
6	3256075	S6_3256075	A	G
6	3256922	S6_3256922	G	T
6	3256926	S6_3256926	A	G
6	3257118	S6_3257118	G	A
6	3257137	S6_3257137	A	T
6	3257165	S6_3257165	T	A
6	3257172	S6_3257172	C	A
6	3257173	S6_3257173	C	T
6	3283207	S6_3283207	G	C
6	3283208	S6_3283208	T	A
6	3283209	S6_3283209	T	A
6	3284554	S6_3284554	C	G
6	3284566	S6_3284566	G	A
6	3284569	S6_3284569	A	G
6	3291726	S6_3291726	T	A
6	3291761	S6_3291761	A	G
6	3291766	S6_3291766	A	G
6	3291921	S6_3291921	A	T
6	3295970	S6_3295970	T	C
6	3295971	S6_3295971	G	C
6	3361566	S6_3361566	A	T
6	3381740	S6_3381740	T	C
6	3419201	S6_3419201	C	G
6	3419838	S6_3419838	T	C
6	3422499	S6_3422499	T	A
6	3427995	S6_3427995	A	C
6	3467067	S6_3467067	G	A
6	3467198	S6_3467198	G	A
6	3479200	S6_3479200	C	G
6	3494358	S6_3494358	C	T
6	3521035	S6_3521035	A	T
6	3555910	S6_3555910	C	T
6	3557436	S6_3557436	G	A
6	3557439	S6_3557439	G	T
6	3598778	S6_3598778	A	T
6	3598802	S6_3598802	A	G
6	3598826	S6_3598826	G	A
6	3598835	S6_3598835	C	G
6	3764629	S6_3764629	G	T
6	3764955	S6_3764955	A	T
6	3773361	S6_3773361	T	A
6	3774497	S6_3774497	A	T
6	3774553	S6_3774553	G	A
6	3774554	S6_3774554	T	A
6	3776576	S6_3776576	A	T
6	3795155	S6_3795155	G	A
6	3795199	S6_3795199	G	A
6	3795206	S6_3795206	T	G
6	3795281	S6_3795281	G	C
6	3795309	S6_3795309	T	A
6	3795372	S6_3795372	G	C
6	3795373	S6_3795373	A	G
6	3807193	S6_3807193	T	C
6	3807229	S6_3807229	G	A
6	3807256	S6_3807256	T	C
6	3807738	S6_3807738	A	T
6	3808193	S6_3808193	A	T
6	3824887	S6_3824887	C	T
6	3824891	S6_3824891	T	C
6	3824903	S6_3824903	A	T
6	3846080	S6_3846080	A	T
6	3896095	S6_3896095	C	A
6	3896101	S6_3896101	G	A
6	3896197	S6_3896197	T	C
6	3896254	S6_3896254	T	A
6	3896256	S6_3896256	C	T
6	3896286	S6_3896286	G	A
6	3905218	S6_3905218	T	A
6	3906652	S6_3906652	A	G
6	3935400	S6_3935400	A	C
6	3935565	S6_3935565	A	C
6	3937061	S6_3937061	G	T
6	4189091	S6_4189091	G	A
6	4206743	S6_4206743	A	T
6	4241275	S6_4241275	C	T
6	4241593	S6_4241593	G	A
6	4241605	S6_4241605	C	A
6	4244268	S6_4244268	A	G
6	4244273	S6_4244273	G	A
6	4244342	S6_4244342	C	A
6	4244362	S6_4244362	C	A
6	4253539	S6_4253539	G	A
6	4253584	S6_4253584	C	T
6	4253593	S6_4253593	G	A
6	4354302	S6_4354302	G	A
6	4504999	S6_4504999	G	A
6	4505028	S6_4505028	T	G
6	4505094	S6_4505094	T	C
6	4505120	S6_4505120	G	A
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6	12946620	S6_12946620	A	G
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6	12959557	S6_12959557	A	G
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6	13366436	S6_13366436	T	G
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6	13466429	S6_13466429	C	T
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6	13562189	S6_13562189	T	A
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6	13562693	S6_13562693	T	C
6	13562786	S6_13562786	G	C
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6	13703237	S6_13703237	T	C
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6	13802420	S6_13802420	C	A
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6	13802474	S6_13802474	G	A
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6	14116849	S6_14116849	A	C
6	14116869	S6_14116869	G	A
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6	14181283	S6_14181283	T	G
6	14197156	S6_14197156	C	A
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6	14216137	S6_14216137	T	C
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6	14216199	S6_14216199	T	A
6	14219284	S6_14219284	A	C
6	14219288	S6_14219288	A	G
6	14220520	S6_14220520	G	C
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6	14357199	S6_14357199	T	A
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6	14632246	S6_14632246	T	A
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6	14691707	S6_14691707	G	A
6	14899200	S6_14899200	A	G
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6	14899237	S6_14899237	G	A
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6	14901237	S6_14901237	G	T
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6	15167777	S6_15167777	T	C
6	15182517	S6_15182517	G	A
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6	15182597	S6_15182597	C	A
6	15182599	S6_15182599	T	C
6	15182623	S6_15182623	C	A
6	15212947	S6_15212947	T	C
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6	15245444	S6_15245444	A	C
6	15245466	S6_15245466	A	C
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6	15273027	S6_15273027	G	T
6	15273097	S6_15273097	G	C
6	15273499	S6_15273499	A	G
6	15273530	S6_15273530	G	T
6	15299547	S6_15299547	G	A
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6	15319302	S6_15319302	A	T
6	15319303	S6_15319303	A	T
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6	15319307	S6_15319307	C	G
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6	15319312	S6_15319312	T	A
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6	15550540	S6_15550540	G	T
6	15550572	S6_15550572	A	T
6	15554261	S6_15554261	G	A
6	15569937	S6_15569937	A	G
6	15572985	S6_15572985	T	C
6	15572990	S6_15572990	G	A
6	15575342	S6_15575342	G	A
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6	15575355	S6_15575355	C	T
6	15575673	S6_15575673	G	A
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6	15575693	S6_15575693	A	G
6	15609918	S6_15609918	C	A
6	15609931	S6_15609931	A	T
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6	15609933	S6_15609933	T	C
6	15609934	S6_15609934	G	A
6	15609936	S6_15609936	T	C
6	15609937	S6_15609937	G	A
6	15610093	S6_15610093	T	G
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6	15618107	S6_15618107	C	G
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6	15618448	S6_15618448	A	G
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6	15618472	S6_15618472	T	C
6	15618481	S6_15618481	C	T
6	15706755	S6_15706755	T	G
6	15728248	S6_15728248	T	C
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6	15947388	S6_15947388	A	T
6	15948344	S6_15948344	G	A
6	15948400	S6_15948400	C	T
6	15953077	S6_15953077	G	T
6	15954309	S6_15954309	T	C
6	15957418	S6_15957418	A	G
6	15965051	S6_15965051	T	C
6	15965070	S6_15965070	A	T
6	16036382	S6_16036382	G	A
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6	16042294	S6_16042294	G	T
6	16042375	S6_16042375	A	G
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6	16043107	S6_16043107	C	G
6	16119603	S6_16119603	C	G
6	16119614	S6_16119614	G	T
6	16119619	S6_16119619	G	A
6	16119621	S6_16119621	C	T
6	16182679	S6_16182679	A	C
6	16182699	S6_16182699	A	G
6	16183359	S6_16183359	A	C
6	16183385	S6_16183385	C	T
6	16277435	S6_16277435	G	C
6	16331132	S6_16331132	G	A
6	16337063	S6_16337063	G	T
6	16337099	S6_16337099	G	A
6	16338193	S6_16338193	G	A
6	16338198	S6_16338198	A	G
6	16353495	S6_16353495	C	T
6	16477447	S6_16477447	T	C
6	16486498	S6_16486498	A	T
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6	18567755	S6_18567755	A	G
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6	18593087	S6_18593087	A	G
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6	19068614	S6_19068614	A	G
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6	19092372	S6_19092372	T	A
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6	19092949	S6_19092949	T	G
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6	19146657	S6_19146657	T	C
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6	19161617	S6_19161617	C	G
6	19161618	S6_19161618	T	A
6	19161621	S6_19161621	G	T
6	19162086	S6_19162086	A	T
6	19169823	S6_19169823	C	T
6	19169866	S6_19169866	A	C
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6	19172390	S6_19172390	T	C
6	19172438	S6_19172438	T	C
6	19172464	S6_19172464	T	A
6	19180785	S6_19180785	C	T
6	19180800	S6_19180800	G	A
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6	22092099	S6_22092099	A	G
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6	22274938	S6_22274938	T	C
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6	22346572	S6_22346572	A	G
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6	22712755	S6_22712755	C	G
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6	22885337	S6_22885337	T	C
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6	22891343	S6_22891343	A	T
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6	22907618	S6_22907618	T	G
6	22909147	S6_22909147	A	G
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6	22955983	S6_22955983	T	C
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6	22976760	S6_22976760	A	G
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6	23162756	S6_23162756	G	A
6	23162766	S6_23162766	G	C
6	23162797	S6_23162797	C	G
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6	23167416	S6_23167416	G	A
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6	23256864	S6_23256864	G	A
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6	23490597	S6_23490597	G	C
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6	23548081	S6_23548081	G	A
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6	23576049	S6_23576049	G	T
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6	23978774	S6_23978774	A	G
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6	24048419	S6_24048419	A	G
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6	24152942	S6_24152942	T	C
6	24152956	S6_24152956	A	G
6	24152983	S6_24152983	C	A
6	24153000	S6_24153000	G	T
6	24154088	S6_24154088	T	C
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6	24259425	S6_24259425	A	C
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6	24296795	S6_24296795	T	C
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6	24353416	S6_24353416	G	A
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6	24357419	S6_24357419	T	C
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6	24393438	S6_24393438	G	A
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6	24522442	S6_24522442	C	T
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6	26691216	S6_26691216	A	G
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6	26876828	S6_26876828	C	A
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6	26909601	S6_26909601	A	G
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6	27102681	S6_27102681	C	A
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6	27889445	S6_27889445	A	G