##fileformat=VCFv4.2
##filedate=20200830
##source="beagle.28Sep18.793.jar"
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated ALT Allele Frequencies">
##INFO=<ID=DR2,Number=1,Type=Float,Description="Dosage R-Squared: estimated squared correlation between estimated REF dose [P(RA) + 2*P(RR)] and true REF dose">
##INFO=<ID=IMP,Number=0,Type=Flag,Description="Imputed marker">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DS,Number=A,Type=Float,Description="estimated ALT dose [P(RA) + P(AA)]">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Estimated Genotype Probability">
#CHROM	POS	ID	REF	ALT
6	82218	S6_82218	A	C
6	219653	S6_219653	T	C
6	225380	S6_225380	G	A
6	225454	S6_225454	A	G
6	225835	S6_225835	G	A
6	225882	S6_225882	C	A
6	233792	S6_233792	T	C
6	303945	S6_303945	A	T
6	324448	S6_324448	G	A
6	324461	S6_324461	T	G
6	324509	S6_324509	G	A
6	325263	S6_325263	G	T
6	422601	S6_422601	G	A
6	424485	S6_424485	C	T
6	424785	S6_424785	C	T
6	424797	S6_424797	C	T
6	425000	S6_425000	C	T
6	430604	S6_430604	T	C
6	433028	S6_433028	T	C
6	468563	S6_468563	A	G
6	477927	S6_477927	A	T
6	479512	S6_479512	T	G
6	518735	S6_518735	T	A
6	548018	S6_548018	A	T
6	550099	S6_550099	C	T
6	550474	S6_550474	G	A
6	550537	S6_550537	T	G
6	550540	S6_550540	A	G
6	550549	S6_550549	T	C
6	550582	S6_550582	A	G
6	679014	S6_679014	A	T
6	689806	S6_689806	T	C
6	811095	S6_811095	T	G
6	811115	S6_811115	G	A
6	812678	S6_812678	A	T
6	812685	S6_812685	G	A
6	828296	S6_828296	T	A
6	844477	S6_844477	T	C
6	845929	S6_845929	G	A
6	845940	S6_845940	T	A
6	890942	S6_890942	C	T
6	941945	S6_941945	A	G
6	946293	S6_946293	C	T
6	984445	S6_984445	T	G
6	984492	S6_984492	A	T
6	984495	S6_984495	T	C
6	984521	S6_984521	G	A
6	984562	S6_984562	T	A
6	984635	S6_984635	A	G
6	984636	S6_984636	C	T
6	984669	S6_984669	C	T
6	996804	S6_996804	T	G
6	1030586	S6_1030586	C	T
6	1033536	S6_1033536	A	G
6	1172120	S6_1172120	C	A
6	1214938	S6_1214938	A	G
6	1229038	S6_1229038	T	G
6	1235013	S6_1235013	T	C
6	1263354	S6_1263354	T	C
6	1269583	S6_1269583	A	G
6	1315620	S6_1315620	T	A
6	1319041	S6_1319041	A	T
6	1319086	S6_1319086	T	C
6	1323059	S6_1323059	G	A
6	1398716	S6_1398716	C	G
6	1433334	S6_1433334	C	A
6	1488105	S6_1488105	G	T
6	1488193	S6_1488193	T	A
6	1500471	S6_1500471	G	A
6	1500491	S6_1500491	T	C
6	1500518	S6_1500518	C	T
6	1868400	S6_1868400	T	C
6	1868602	S6_1868602	T	C
6	2051451	S6_2051451	C	T
6	2052300	S6_2052300	A	G
6	2104773	S6_2104773	A	T
6	2104809	S6_2104809	G	A
6	2113122	S6_2113122	G	A
6	2136448	S6_2136448	C	G
6	2260732	S6_2260732	T	G
6	2479919	S6_2479919	C	T
6	2553615	S6_2553615	C	A
6	2616212	S6_2616212	C	T
6	2616919	S6_2616919	T	C
6	2619085	S6_2619085	A	G
6	2619091	S6_2619091	A	C
6	2619106	S6_2619106	T	C
6	2730684	S6_2730684	T	C
6	2871974	S6_2871974	A	G
6	3807193	S6_3807193	T	C
6	3937061	S6_3937061	G	T
6	4598696	S6_4598696	T	C
6	4761545	S6_4761545	G	A
6	4761567	S6_4761567	T	C
6	5397565	S6_5397565	T	A
6	5437550	S6_5437550	T	G
6	6137391	S6_6137391	C	T
6	6142729	S6_6142729	G	T
6	6456062	S6_6456062	T	A
6	7550730	S6_7550730	C	G
6	7595887	S6_7595887	C	T
6	7635683	S6_7635683	T	C
6	7697295	S6_7697295	A	G
6	7796144	S6_7796144	T	A
6	7837872	S6_7837872	T	C
6	8288251	S6_8288251	C	G
6	8289350	S6_8289350	A	G
6	8679229	S6_8679229	A	T
6	8679259	S6_8679259	T	C
6	8680530	S6_8680530	C	T
6	9068544	S6_9068544	A	T
6	9780651	S6_9780651	T	A
6	9781820	S6_9781820	G	T
6	9953373	S6_9953373	G	T
6	9953684	S6_9953684	T	A
6	10814718	S6_10814718	G	T
6	11927465	S6_11927465	T	A
6	11946801	S6_11946801	T	C
6	12326093	S6_12326093	A	C
6	12697608	S6_12697608	T	C
6	12927005	S6_12927005	T	G
6	12933373	S6_12933373	C	A
6	12956873	S6_12956873	C	A
6	12956884	S6_12956884	C	A
6	12956964	S6_12956964	A	C
6	12958717	S6_12958717	A	C
6	12959410	S6_12959410	A	G
6	12959433	S6_12959433	A	C
6	12959436	S6_12959436	A	G
6	12959515	S6_12959515	T	G
6	13182962	S6_13182962	A	T
6	13182988	S6_13182988	A	G
6	13183849	S6_13183849	A	T
6	13184150	S6_13184150	G	A
6	13187655	S6_13187655	G	A
6	13365122	S6_13365122	T	C
6	13365124	S6_13365124	A	T
6	13601029	S6_13601029	G	A
6	13601965	S6_13601965	A	T
6	13708394	S6_13708394	C	T
6	13794944	S6_13794944	C	A
6	13795012	S6_13795012	A	G
6	13802265	S6_13802265	G	T
6	13802326	S6_13802326	C	T
6	13802412	S6_13802412	G	T
6	13802420	S6_13802420	C	A
6	13802474	S6_13802474	G	A
6	14116763	S6_14116763	G	C
6	14116774	S6_14116774	A	T
6	14116811	S6_14116811	A	T
6	14123513	S6_14123513	T	A
6	14179231	S6_14179231	C	T
6	14181283	S6_14181283	T	G
6	14197156	S6_14197156	C	A
6	14216127	S6_14216127	G	T
6	14216128	S6_14216128	G	T
6	14216137	S6_14216137	T	C
6	14216195	S6_14216195	A	T
6	14216199	S6_14216199	T	A
6	14219284	S6_14219284	A	C
6	14219288	S6_14219288	A	G
6	14220520	S6_14220520	G	C
6	14255427	S6_14255427	C	T
6	14285644	S6_14285644	G	T
6	14287112	S6_14287112	T	C
6	14287269	S6_14287269	G	T
6	14360576	S6_14360576	G	A
6	14434084	S6_14434084	T	C
6	14434477	S6_14434477	A	T
6	14488923	S6_14488923	G	A
6	14488936	S6_14488936	C	T
6	14488942	S6_14488942	A	G
6	14488948	S6_14488948	G	T
6	14488949	S6_14488949	A	T
6	14488958	S6_14488958	T	A
6	14489012	S6_14489012	T	A
6	14489020	S6_14489020	T	C
6	14490844	S6_14490844	T	G
6	14581005	S6_14581005	T	A
6	14581057	S6_14581057	C	G
6	14581081	S6_14581081	A	C
6	14631912	S6_14631912	C	A
6	14632480	S6_14632480	A	T
6	14633701	S6_14633701	T	C
6	15182597	S6_15182597	C	A
6	15182599	S6_15182599	T	C
6	15212947	S6_15212947	T	C
6	15273027	S6_15273027	G	T
6	15273097	S6_15273097	G	C
6	15273499	S6_15273499	A	G
6	15273530	S6_15273530	G	T
6	15299615	S6_15299615	G	T
6	15550318	S6_15550318	G	A
6	15550540	S6_15550540	G	T
6	15550572	S6_15550572	A	T
6	15554261	S6_15554261	G	A
6	15569937	S6_15569937	A	G
6	15572985	S6_15572985	T	C
6	15572990	S6_15572990	G	A
6	15575349	S6_15575349	T	A
6	15575355	S6_15575355	C	T
6	15575673	S6_15575673	G	A
6	15575693	S6_15575693	A	G
6	15609931	S6_15609931	A	T
6	15609932	S6_15609932	C	A
6	15610093	S6_15610093	T	G
6	15610410	S6_15610410	A	C
6	15614520	S6_15614520	C	T
6	15618107	S6_15618107	C	G
6	15618113	S6_15618113	G	C
6	15618146	S6_15618146	C	A
6	15618231	S6_15618231	G	A
6	15618232	S6_15618232	A	T
6	15618448	S6_15618448	A	G
6	15618451	S6_15618451	G	A
6	15618472	S6_15618472	T	C
6	15618481	S6_15618481	C	T
6	15735345	S6_15735345	T	C
6	15840008	S6_15840008	G	A
6	15893078	S6_15893078	G	T
6	15947388	S6_15947388	A	T
6	15948344	S6_15948344	G	A
6	15953077	S6_15953077	G	T
6	15957418	S6_15957418	A	G
6	15965051	S6_15965051	T	C
6	16036382	S6_16036382	G	A
6	16042294	S6_16042294	G	T
6	16042375	S6_16042375	A	G
6	16119603	S6_16119603	C	G
6	16119614	S6_16119614	G	T
6	16119619	S6_16119619	G	A
6	16119621	S6_16119621	C	T
6	16183359	S6_16183359	A	C
6	16183385	S6_16183385	C	T
6	16353495	S6_16353495	C	T
6	16477447	S6_16477447	T	C
6	16575259	S6_16575259	A	G
6	16627648	S6_16627648	G	A
6	16627742	S6_16627742	A	T
6	16656439	S6_16656439	G	C
6	16832308	S6_16832308	G	A
6	16833728	S6_16833728	G	T
6	16935051	S6_16935051	A	G
6	17010032	S6_17010032	C	T
6	17011921	S6_17011921	G	C
6	17041138	S6_17041138	T	A
6	17041166	S6_17041166	G	T
6	17041236	S6_17041236	C	T
6	17041239	S6_17041239	T	A
6	17041281	S6_17041281	A	T
6	17055080	S6_17055080	T	A
6	17055385	S6_17055385	C	T
6	17056570	S6_17056570	A	G
6	17056632	S6_17056632	C	A
6	17068831	S6_17068831	A	G
6	17068845	S6_17068845	T	C
6	17068846	S6_17068846	G	A
6	17082356	S6_17082356	G	A
6	17082482	S6_17082482	A	C
6	17082485	S6_17082485	T	G
6	17082487	S6_17082487	A	T
6	17082505	S6_17082505	C	G
6	17082554	S6_17082554	T	C
6	17083762	S6_17083762	G	A
6	17083779	S6_17083779	G	C
6	17197258	S6_17197258	T	C
6	17197287	S6_17197287	G	A
6	17222695	S6_17222695	T	G
6	17222704	S6_17222704	C	T
6	17222814	S6_17222814	A	G
6	17229648	S6_17229648	C	A
6	17229717	S6_17229717	T	C
6	17229722	S6_17229722	T	C
6	17240275	S6_17240275	C	T
6	17245168	S6_17245168	A	G
6	17245222	S6_17245222	T	A
6	17301229	S6_17301229	A	G
6	17353629	S6_17353629	C	G
6	17365646	S6_17365646	T	A
6	17379220	S6_17379220	C	A
6	17384060	S6_17384060	C	T
6	17384062	S6_17384062	C	A
6	17386572	S6_17386572	C	G
6	17388721	S6_17388721	A	T
6	17411104	S6_17411104	T	A
6	17411119	S6_17411119	A	G
6	17412159	S6_17412159	T	G
6	17412342	S6_17412342	T	A
6	17457793	S6_17457793	T	A
6	17468490	S6_17468490	T	A
6	17475340	S6_17475340	C	G
6	17475445	S6_17475445	T	C
6	17482894	S6_17482894	A	G
6	17489747	S6_17489747	C	A
6	17494679	S6_17494679	A	G
6	17494785	S6_17494785	C	A
6	17494786	S6_17494786	G	T
6	17499193	S6_17499193	A	G
6	17533960	S6_17533960	A	C
6	17600644	S6_17600644	A	G
6	17600735	S6_17600735	A	G
6	17600749	S6_17600749	G	C
6	17677725	S6_17677725	T	C
6	17677864	S6_17677864	G	C
6	17696443	S6_17696443	C	G
6	17773994	S6_17773994	G	A
6	17875997	S6_17875997	A	T
6	17917973	S6_17917973	G	T
6	17918011	S6_17918011	C	T
6	17918031	S6_17918031	C	G
6	17929596	S6_17929596	T	A
6	17929603	S6_17929603	A	T
6	17935495	S6_17935495	A	T
6	17936040	S6_17936040	C	T
6	17936058	S6_17936058	C	G
6	17937337	S6_17937337	T	C
6	17939010	S6_17939010	T	A
6	18013933	S6_18013933	A	C
6	18089277	S6_18089277	G	A
6	18089484	S6_18089484	C	T
6	18089502	S6_18089502	T	A
6	18107098	S6_18107098	A	T
6	18330795	S6_18330795	C	T
6	18352280	S6_18352280	A	T
6	18427237	S6_18427237	G	A
6	18431499	S6_18431499	T	C
6	18432566	S6_18432566	T	C
6	18432664	S6_18432664	A	G
6	18449920	S6_18449920	A	G
6	18461864	S6_18461864	A	G
6	18469797	S6_18469797	G	T
6	18500022	S6_18500022	A	G
6	18508489	S6_18508489	G	A
6	18511652	S6_18511652	A	T
6	18513742	S6_18513742	A	C
6	18514151	S6_18514151	T	A
6	18523993	S6_18523993	G	A
6	18567791	S6_18567791	C	T
6	18567802	S6_18567802	G	A
6	18567876	S6_18567876	G	T
6	18567926	S6_18567926	A	T
6	18593013	S6_18593013	A	C
6	18593017	S6_18593017	G	C
6	18593018	S6_18593018	C	T
6	18593021	S6_18593021	A	T
6	18593087	S6_18593087	A	G
6	18686101	S6_18686101	G	C
6	18689726	S6_18689726	G	C
6	18692678	S6_18692678	C	T
6	18698885	S6_18698885	G	A
6	18698892	S6_18698892	T	A
6	18709331	S6_18709331	G	C
6	18765984	S6_18765984	G	A
6	18767366	S6_18767366	C	G
6	18963652	S6_18963652	T	C
6	18964936	S6_18964936	T	A
6	18965228	S6_18965228	T	C
6	18965246	S6_18965246	T	C
6	18965247	S6_18965247	G	A
6	18965257	S6_18965257	C	T
6	18976605	S6_18976605	T	A
6	18985513	S6_18985513	C	G
6	18985516	S6_18985516	T	C
6	18988279	S6_18988279	G	C
6	18988404	S6_18988404	A	T
6	19092372	S6_19092372	T	A
6	19092662	S6_19092662	C	T
6	19092949	S6_19092949	T	G
6	19127678	S6_19127678	G	A
6	19146657	S6_19146657	T	C
6	19170000	S6_19170000	G	A
6	19170013	S6_19170013	G	A
6	19170182	S6_19170182	T	G
6	19233383	S6_19233383	T	A
6	19239960	S6_19239960	T	C
6	19239965	S6_19239965	A	G
6	19246076	S6_19246076	A	G
6	19248231	S6_19248231	C	G
6	19271191	S6_19271191	T	C
6	19271232	S6_19271232	T	G
6	19271957	S6_19271957	G	T
6	19283921	S6_19283921	C	T
6	19283933	S6_19283933	C	T
6	19452496	S6_19452496	C	T
6	19454813	S6_19454813	A	G
6	19454819	S6_19454819	T	C
6	19495159	S6_19495159	G	A
6	19531575	S6_19531575	G	A
6	19642244	S6_19642244	T	C
6	19642270	S6_19642270	T	A
6	19671895	S6_19671895	A	T
6	19687742	S6_19687742	G	T
6	19687765	S6_19687765	A	G
6	19687945	S6_19687945	A	C
6	19690156	S6_19690156	G	C
6	19690171	S6_19690171	C	A
6	19690233	S6_19690233	A	C
6	19690286	S6_19690286	G	C
6	19690308	S6_19690308	A	G
6	19690347	S6_19690347	G	A
6	19690361	S6_19690361	G	A
6	19690395	S6_19690395	G	T
6	19690403	S6_19690403	C	T
6	19690404	S6_19690404	T	C
6	19690670	S6_19690670	G	A
6	19690741	S6_19690741	C	T
6	19690793	S6_19690793	T	C
6	19692588	S6_19692588	T	C
6	19692688	S6_19692688	A	C
6	19692736	S6_19692736	G	C
6	19720487	S6_19720487	A	G
6	19722128	S6_19722128	A	G
6	19746824	S6_19746824	T	C
6	19746847	S6_19746847	T	C
6	19746956	S6_19746956	T	C
6	19749558	S6_19749558	T	C
6	19757583	S6_19757583	A	T
6	19757625	S6_19757625	A	C
6	19759257	S6_19759257	A	G
6	19759288	S6_19759288	C	T
6	19759303	S6_19759303	T	C
6	19759313	S6_19759313	C	T
6	19759365	S6_19759365	C	T
6	19783894	S6_19783894	C	G
6	19783895	S6_19783895	A	C
6	19783896	S6_19783896	C	G
6	19783974	S6_19783974	A	G
6	19784500	S6_19784500	A	G
6	19785983	S6_19785983	G	T
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6	27564566	S6_27564566	G	A
6	27568683	S6_27568683	G	A
6	27591079	S6_27591079	C	T
6	27596721	S6_27596721	T	C
6	27597403	S6_27597403	A	G
6	27849781	S6_27849781	T	G
6	27849898	S6_27849898	G	A
6	27871911	S6_27871911	T	C
6	27889445	S6_27889445	A	G