##fileformat=VCFv4.2
##filedate=20200830
##source="beagle.28Sep18.793.jar"
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated ALT Allele Frequencies">
##INFO=<ID=DR2,Number=1,Type=Float,Description="Dosage R-Squared: estimated squared correlation between estimated REF dose [P(RA) + 2*P(RR)] and true REF dose">
##INFO=<ID=IMP,Number=0,Type=Flag,Description="Imputed marker">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DS,Number=A,Type=Float,Description="estimated ALT dose [P(RA) + P(AA)]">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Estimated Genotype Probability">
#CHROM	POS	ID	REF	ALT
4	538000	S4_538000	A	T
4	651715	S4_651715	C	T
4	665319	S4_665319	T	C
4	688729	S4_688729	G	A
4	689217	S4_689217	T	C
4	689393	S4_689393	A	T
4	689584	S4_689584	A	G
4	693254	S4_693254	G	T
4	693296	S4_693296	G	A
4	693399	S4_693399	T	C
4	696751	S4_696751	A	T
4	697860	S4_697860	A	G
4	704441	S4_704441	A	G
4	712290	S4_712290	T	C
4	716062	S4_716062	A	C
4	719643	S4_719643	T	C
4	719708	S4_719708	T	C
4	733139	S4_733139	T	G
4	733925	S4_733925	T	G
4	733932	S4_733932	T	C
4	734020	S4_734020	C	T
4	734078	S4_734078	A	T
4	734128	S4_734128	G	C
4	734145	S4_734145	A	C
4	734340	S4_734340	G	A
4	753736	S4_753736	T	C
4	859157	S4_859157	C	A
4	860940	S4_860940	T	C
4	1206457	S4_1206457	A	G
4	1305475	S4_1305475	T	C
4	1446798	S4_1446798	A	C
4	1449068	S4_1449068	A	C
4	1452794	S4_1452794	A	G
4	1462733	S4_1462733	G	T
4	1534117	S4_1534117	G	A
4	1538297	S4_1538297	A	G
4	1542254	S4_1542254	A	C
4	1544576	S4_1544576	A	G
4	1544580	S4_1544580	C	A
4	1614972	S4_1614972	A	G
4	1629486	S4_1629486	T	C
4	1693351	S4_1693351	C	T
4	1960032	S4_1960032	T	G
4	2520985	S4_2520985	T	A
4	2551365	S4_2551365	T	C
4	2555448	S4_2555448	A	C
4	2558363	S4_2558363	T	A
4	2570871	S4_2570871	C	G
4	2660981	S4_2660981	A	G
4	2718259	S4_2718259	G	T
4	2721078	S4_2721078	T	C
4	2725536	S4_2725536	T	C
4	2731000	S4_2731000	T	C
4	2731033	S4_2731033	G	A
4	2760660	S4_2760660	C	G
4	2760708	S4_2760708	C	A
4	2760878	S4_2760878	T	C
4	2761250	S4_2761250	A	G
4	2877781	S4_2877781	A	G
4	2877786	S4_2877786	T	A
4	2877840	S4_2877840	C	G
4	2877939	S4_2877939	A	G
4	3404018	S4_3404018	A	G
4	3558756	S4_3558756	C	G
4	3567982	S4_3567982	A	G
4	4005847	S4_4005847	A	G
4	4069438	S4_4069438	C	G
4	4180084	S4_4180084	T	A
4	4389083	S4_4389083	C	T
4	4404013	S4_4404013	T	A
4	4404064	S4_4404064	A	G
4	4404167	S4_4404167	T	C
4	4739544	S4_4739544	G	A
4	4739545	S4_4739545	C	T
4	4739613	S4_4739613	T	A
4	4739620	S4_4739620	C	G
4	4745877	S4_4745877	T	C
4	5219308	S4_5219308	A	G
4	5219676	S4_5219676	A	T
4	5226934	S4_5226934	T	G
4	5702775	S4_5702775	T	A
4	5847068	S4_5847068	C	T
4	5849483	S4_5849483	C	T
4	5872238	S4_5872238	A	G
4	5873900	S4_5873900	C	T
4	5882862	S4_5882862	A	G
4	5884402	S4_5884402	A	G
4	5884409	S4_5884409	T	A
4	5944354	S4_5944354	G	A
4	5944413	S4_5944413	G	C
4	6002558	S4_6002558	A	G
4	6002691	S4_6002691	A	G
4	6043799	S4_6043799	C	T
4	6233541	S4_6233541	T	C
4	6566307	S4_6566307	T	G
4	6566347	S4_6566347	T	C
4	6777830	S4_6777830	C	A
4	6855471	S4_6855471	C	T
4	7147631	S4_7147631	A	C
4	7147646	S4_7147646	T	G
4	7246469	S4_7246469	G	A
4	7246485	S4_7246485	G	A
4	7246780	S4_7246780	C	G
4	7248096	S4_7248096	T	C
4	7262753	S4_7262753	G	T
4	7265113	S4_7265113	G	T
4	7265201	S4_7265201	A	G
4	7265493	S4_7265493	A	G
4	7265522	S4_7265522	G	C
4	7265550	S4_7265550	A	G
4	7265774	S4_7265774	T	A
4	7265801	S4_7265801	T	C
4	7266081	S4_7266081	C	T
4	7266191	S4_7266191	A	G
4	7266789	S4_7266789	A	G
4	7279092	S4_7279092	C	T
4	7398745	S4_7398745	G	A
4	7524427	S4_7524427	T	A
4	7786787	S4_7786787	C	G
4	8291104	S4_8291104	G	C
4	8291144	S4_8291144	C	A
4	8652714	S4_8652714	T	G
4	8840602	S4_8840602	C	G
4	8840625	S4_8840625	T	G
4	9146409	S4_9146409	A	C
4	9146491	S4_9146491	C	T
4	9567004	S4_9567004	C	T
4	9571496	S4_9571496	C	T
4	9571604	S4_9571604	G	A
4	9580740	S4_9580740	G	A
4	9818306	S4_9818306	C	T
4	9818307	S4_9818307	A	T
4	9942404	S4_9942404	G	A
4	9942407	S4_9942407	G	A
4	10498685	S4_10498685	C	T
4	10498712	S4_10498712	A	T
4	10498755	S4_10498755	C	T
4	10532402	S4_10532402	G	T
4	10532447	S4_10532447	G	T
4	10532676	S4_10532676	T	C
4	10532744	S4_10532744	C	T
4	10532840	S4_10532840	G	A
4	10532859	S4_10532859	C	T
4	10532907	S4_10532907	G	A
4	10532950	S4_10532950	C	T
4	10532978	S4_10532978	C	T
4	10533008	S4_10533008	G	A
4	10534641	S4_10534641	C	T
4	10534687	S4_10534687	G	A
4	10537425	S4_10537425	T	G
4	10537426	S4_10537426	G	C
4	10537429	S4_10537429	G	C
4	10593618	S4_10593618	T	C
4	10616330	S4_10616330	T	A
4	10616365	S4_10616365	A	C
4	11015221	S4_11015221	A	G
4	11015289	S4_11015289	T	G
4	11015336	S4_11015336	G	A
4	11015490	S4_11015490	G	C
4	11015533	S4_11015533	A	T
4	11292816	S4_11292816	A	G
4	11417719	S4_11417719	C	T
4	11417733	S4_11417733	C	A
4	11417739	S4_11417739	A	C
4	11432542	S4_11432542	T	A
4	11438837	S4_11438837	A	C
4	11438899	S4_11438899	T	C
4	11522293	S4_11522293	C	T
4	12273186	S4_12273186	T	A
4	12489247	S4_12489247	C	T
4	12539338	S4_12539338	C	G
4	12539382	S4_12539382	A	G
4	12602262	S4_12602262	G	A
4	12606574	S4_12606574	G	A
4	13079187	S4_13079187	C	A
4	13268910	S4_13268910	G	A
4	13644545	S4_13644545	C	T
4	14027608	S4_14027608	T	C
4	15391922	S4_15391922	A	G
4	15400153	S4_15400153	G	A
4	15400286	S4_15400286	G	C
4	15407875	S4_15407875	T	A
4	15799392	S4_15799392	C	T
4	15799416	S4_15799416	G	A
4	15893132	S4_15893132	C	T
4	17299833	S4_17299833	T	C
4	17312543	S4_17312543	T	G
4	17625350	S4_17625350	A	G
4	19153273	S4_19153273	G	T
4	19367795	S4_19367795	A	T
4	19401828	S4_19401828	G	A
4	19995364	S4_19995364	C	T
4	20142683	S4_20142683	A	C
4	20142825	S4_20142825	G	T
4	20158185	S4_20158185	G	A
4	20158266	S4_20158266	A	G
4	20197137	S4_20197137	C	T
4	20381400	S4_20381400	C	T
4	20938560	S4_20938560	T	G
4	21478617	S4_21478617	G	A
4	21478618	S4_21478618	A	T
4	21523187	S4_21523187	A	T
4	21524505	S4_21524505	T	C
4	21524564	S4_21524564	T	G
4	21534880	S4_21534880	C	A
4	21565982	S4_21565982	C	G
4	21607404	S4_21607404	C	T
4	21635881	S4_21635881	G	T
4	21635976	S4_21635976	C	T
4	21669151	S4_21669151	C	T
4	21673953	S4_21673953	C	A
4	21673972	S4_21673972	C	T
4	21675024	S4_21675024	C	T
4	21676247	S4_21676247	G	T
4	21689877	S4_21689877	T	G
4	21736575	S4_21736575	T	A
4	21742199	S4_21742199	A	G
4	21796450	S4_21796450	A	G
4	21796495	S4_21796495	T	C
4	21799454	S4_21799454	A	T
4	21799485	S4_21799485	A	G
4	21799500	S4_21799500	T	A
4	21807959	S4_21807959	A	T
4	21840136	S4_21840136	T	C
4	21969768	S4_21969768	T	C
4	21969796	S4_21969796	G	T
4	22002558	S4_22002558	G	A
4	22002592	S4_22002592	C	T
4	22002594	S4_22002594	G	C
4	22044051	S4_22044051	G	C
4	22044052	S4_22044052	C	T
4	22045889	S4_22045889	C	A
4	22052224	S4_22052224	T	G
4	22052397	S4_22052397	A	G
4	22236670	S4_22236670	T	A
4	22236727	S4_22236727	A	G
4	22236731	S4_22236731	C	T
4	22535704	S4_22535704	G	A
4	22551984	S4_22551984	T	C
4	22554673	S4_22554673	G	C
4	22555305	S4_22555305	C	T
4	22622424	S4_22622424	A	G
4	22622433	S4_22622433	C	T
4	22622440	S4_22622440	C	G
4	22662223	S4_22662223	G	C
4	22771804	S4_22771804	A	G
4	22773332	S4_22773332	T	G
4	22901325	S4_22901325	G	C
4	22919237	S4_22919237	A	G
4	22919254	S4_22919254	G	A
4	22924004	S4_22924004	A	G
4	23000077	S4_23000077	A	T
4	23004804	S4_23004804	T	C
4	23091803	S4_23091803	T	C
4	23108033	S4_23108033	T	C
4	23114778	S4_23114778	C	A
4	23114856	S4_23114856	C	G
4	23114969	S4_23114969	T	A
4	23115201	S4_23115201	G	A
4	23167215	S4_23167215	T	G
4	23167225	S4_23167225	T	A
4	23176228	S4_23176228	T	C
4	23176243	S4_23176243	T	A
4	23176473	S4_23176473	A	G
4	23182241	S4_23182241	G	T
4	23182340	S4_23182340	A	C
4	23208382	S4_23208382	A	G
4	23214697	S4_23214697	A	G
4	23214708	S4_23214708	C	T
4	23214738	S4_23214738	T	G
4	23214739	S4_23214739	C	A
4	23214845	S4_23214845	A	T
4	23215079	S4_23215079	C	T
4	23216457	S4_23216457	G	T
4	23218235	S4_23218235	C	T
4	23218351	S4_23218351	A	T
4	23224506	S4_23224506	G	A
4	23229691	S4_23229691	A	G
4	23275443	S4_23275443	G	A
4	23276156	S4_23276156	T	C
4	23286308	S4_23286308	T	C
4	23306482	S4_23306482	A	C
4	23311313	S4_23311313	T	G
4	23311366	S4_23311366	T	C
4	23311393	S4_23311393	C	T
4	23311412	S4_23311412	T	C
4	23322412	S4_23322412	C	T
4	23326485	S4_23326485	G	A
4	23328232	S4_23328232	T	C
4	23328239	S4_23328239	A	T
4	23356031	S4_23356031	T	A
4	23359331	S4_23359331	A	C
4	23359364	S4_23359364	T	C
4	23359455	S4_23359455	A	G
4	23362863	S4_23362863	G	A
4	23363073	S4_23363073	A	C
4	23367235	S4_23367235	T	C
4	23368127	S4_23368127	C	T
4	23370607	S4_23370607	G	A
4	23375818	S4_23375818	A	T
4	23376022	S4_23376022	C	T
4	23376157	S4_23376157	G	A
4	23393019	S4_23393019	T	A
4	23393151	S4_23393151	G	T
4	23414099	S4_23414099	T	C
4	23462185	S4_23462185	A	C
4	23596963	S4_23596963	A	G
4	23658717	S4_23658717	A	T
4	23659556	S4_23659556	T	G
4	23659595	S4_23659595	G	A
4	23709151	S4_23709151	A	T
4	23721162	S4_23721162	C	A
4	23721174	S4_23721174	C	T
4	23721270	S4_23721270	A	G
4	23721281	S4_23721281	G	A
4	23721309	S4_23721309	A	C
4	23775748	S4_23775748	A	C
4	23775820	S4_23775820	C	A
4	23775829	S4_23775829	G	T
4	23777902	S4_23777902	G	A
4	23779159	S4_23779159	G	T
4	23779188	S4_23779188	A	G
4	23780081	S4_23780081	C	T
4	23780185	S4_23780185	G	A
4	23804677	S4_23804677	A	T
4	23813256	S4_23813256	T	C
4	23813566	S4_23813566	A	G
4	23820890	S4_23820890	C	T
4	23831440	S4_23831440	C	T
4	23831492	S4_23831492	C	T
4	23854226	S4_23854226	C	T
4	23854261	S4_23854261	C	T
4	23888240	S4_23888240	G	A
4	23893434	S4_23893434	C	T
4	23893439	S4_23893439	C	G
4	23912619	S4_23912619	T	A
4	23914739	S4_23914739	C	T
4	23914747	S4_23914747	C	A
4	23914756	S4_23914756	C	T
4	23914762	S4_23914762	C	T
4	23915044	S4_23915044	G	A
4	23915075	S4_23915075	G	A
4	23915084	S4_23915084	T	C
4	23916152	S4_23916152	G	A
4	23916158	S4_23916158	A	G
4	23916270	S4_23916270	C	T
4	23916326	S4_23916326	G	A
4	23916659	S4_23916659	G	A
4	23946039	S4_23946039	A	T
4	23946045	S4_23946045	T	A
4	23950979	S4_23950979	G	T
4	23950998	S4_23950998	G	A
4	23952610	S4_23952610	T	A
4	23952633	S4_23952633	T	A
4	23952636	S4_23952636	C	T
4	23952661	S4_23952661	G	A
4	23952684	S4_23952684	C	T
4	23952696	S4_23952696	T	C
4	23954251	S4_23954251	C	T
4	23954273	S4_23954273	G	A
4	23964590	S4_23964590	C	G
4	23964592	S4_23964592	A	G
4	23995220	S4_23995220	A	G
4	23995317	S4_23995317	T	G
4	23995342	S4_23995342	G	A
4	23995707	S4_23995707	C	G
4	24005782	S4_24005782	T	C
4	24011679	S4_24011679	A	C
4	24012618	S4_24012618	C	A
4	24012622	S4_24012622	G	T
4	24012712	S4_24012712	A	T
4	24016347	S4_24016347	A	G
4	24017518	S4_24017518	T	C
4	24017654	S4_24017654	C	T
4	24017672	S4_24017672	C	T
4	24017678	S4_24017678	A	G
4	24017717	S4_24017717	G	A
4	24017748	S4_24017748	G	A
4	24157942	S4_24157942	A	C
4	24271232	S4_24271232	A	G
4	24282434	S4_24282434	C	A
4	24288328	S4_24288328	A	G
4	24348837	S4_24348837	T	A
4	24362425	S4_24362425	T	C
4	24406405	S4_24406405	C	G
4	24412595	S4_24412595	T	C
4	24412720	S4_24412720	C	A
4	24418677	S4_24418677	G	C
4	24430292	S4_24430292	G	A
4	24475870	S4_24475870	A	G
4	24476046	S4_24476046	C	G
4	24476078	S4_24476078	T	C
4	24476219	S4_24476219	T	G
4	24483682	S4_24483682	G	C
4	24492964	S4_24492964	A	T
4	24494139	S4_24494139	A	G
4	24494148	S4_24494148	G	A
4	24499028	S4_24499028	A	G
4	24500426	S4_24500426	G	A
4	24500450	S4_24500450	T	C
4	24501150	S4_24501150	G	A
4	24501188	S4_24501188	C	T
4	24501219	S4_24501219	A	T
4	24501519	S4_24501519	C	A
4	24501729	S4_24501729	T	A
4	24501845	S4_24501845	A	G
4	24502216	S4_24502216	T	G
4	24502234	S4_24502234	T	A
4	24502996	S4_24502996	G	T
4	24548002	S4_24548002	A	G
4	24556243	S4_24556243	G	A
4	24556288	S4_24556288	C	T
4	24556305	S4_24556305	A	G
4	24561920	S4_24561920	T	G
4	24561947	S4_24561947	G	A
4	24561973	S4_24561973	A	G
4	24561985	S4_24561985	C	T
4	24562100	S4_24562100	A	C
4	24562118	S4_24562118	A	T
4	24570661	S4_24570661	G	A
4	24580725	S4_24580725	C	G
4	24580738	S4_24580738	T	C
4	24580874	S4_24580874	T	G
4	24589162	S4_24589162	C	T
4	24589204	S4_24589204	A	G
4	24600175	S4_24600175	T	G
4	24600212	S4_24600212	A	G
4	24600236	S4_24600236	A	G
4	24600367	S4_24600367	C	T
4	24600378	S4_24600378	T	G
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4	24602596	S4_24602596	T	A
4	24602675	S4_24602675	A	C
4	24602958	S4_24602958	A	T
4	24603856	S4_24603856	C	A
4	24603875	S4_24603875	G	T
4	24603889	S4_24603889	G	C
4	24603891	S4_24603891	G	C
4	24603892	S4_24603892	A	G
4	24603910	S4_24603910	T	C
4	24604301	S4_24604301	C	A
4	24607541	S4_24607541	A	G
4	24607607	S4_24607607	C	T
4	24607646	S4_24607646	C	G
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4	24650148	S4_24650148	A	C
4	24650219	S4_24650219	C	G
4	24660390	S4_24660390	C	T
4	24660399	S4_24660399	C	T
4	24677414	S4_24677414	A	C
4	24677473	S4_24677473	A	G
4	24695919	S4_24695919	C	G
4	24698805	S4_24698805	G	C
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4	24719411	S4_24719411	A	G
4	24719435	S4_24719435	A	G
4	24719504	S4_24719504	C	A
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4	24719565	S4_24719565	C	T
4	24719760	S4_24719760	G	A
4	24719824	S4_24719824	T	C
4	24727703	S4_24727703	T	A
4	24727710	S4_24727710	A	T
4	24730552	S4_24730552	A	G
4	24730590	S4_24730590	A	G
4	24730608	S4_24730608	A	G
4	24730617	S4_24730617	C	G
4	24732012	S4_24732012	C	T
4	24736414	S4_24736414	C	T
4	24761677	S4_24761677	C	T
4	24761705	S4_24761705	A	G
4	24761752	S4_24761752	T	C
4	24807130	S4_24807130	A	G
4	24807204	S4_24807204	A	C
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4	24818484	S4_24818484	G	C
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4	24874945	S4_24874945	T	A
4	24874946	S4_24874946	G	T
4	24874951	S4_24874951	A	T
4	24874952	S4_24874952	A	C
4	24906285	S4_24906285	C	T
4	24906321	S4_24906321	A	C
4	24906325	S4_24906325	G	A
4	24933582	S4_24933582	G	A
4	24940108	S4_24940108	G	T
4	24959261	S4_24959261	T	C
4	24991519	S4_24991519	A	T
4	25125952	S4_25125952	C	G
4	25125964	S4_25125964	C	T
4	25130284	S4_25130284	C	T
4	25240580	S4_25240580	T	G
4	25263730	S4_25263730	A	C
4	25299354	S4_25299354	A	G
4	25305736	S4_25305736	A	C
4	25324310	S4_25324310	A	G
4	25325699	S4_25325699	T	C
4	25325732	S4_25325732	T	C
4	26123973	S4_26123973	A	C
4	26123974	S4_26123974	G	C
4	26129317	S4_26129317	G	A
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4	26223222	S4_26223222	T	C
4	26609850	S4_26609850	G	T
4	26793543	S4_26793543	G	A
4	26798257	S4_26798257	T	C
4	26851376	S4_26851376	T	G
4	26852182	S4_26852182	C	A
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4	26865551	S4_26865551	T	A
4	26865642	S4_26865642	T	A
4	26872570	S4_26872570	T	C
4	26872911	S4_26872911	A	T
4	26887736	S4_26887736	A	C
4	26938760	S4_26938760	G	A
4	26939464	S4_26939464	C	G
4	26969052	S4_26969052	G	C
4	27018308	S4_27018308	C	T
4	27058731	S4_27058731	G	A
4	27122556	S4_27122556	A	G
4	27125158	S4_27125158	T	C
4	27125198	S4_27125198	G	A
4	27126793	S4_27126793	T	C
4	27127660	S4_27127660	T	G
4	27127662	S4_27127662	C	T
4	27127850	S4_27127850	C	A
4	27130488	S4_27130488	T	A
4	27133646	S4_27133646	C	T
4	27137315	S4_27137315	T	C
4	27183762	S4_27183762	T	C
4	27183792	S4_27183792	A	G