alphapeel.vped:
AlphaAssign validated pedigree

cassavaV6_0.chromosome.ICGMCv2.smoothspline.srt.norm.map:
ICGMC map

chr0*familycorrected_0.30.graph:
SHAPEIT2 output

chr0*_familycorrected_0.30.mapavg:
duoHMM output

chr0*.map:
map file for SHAPEIT2 input

chr0*.ped:
ped file for SHAPEIT2 input

chr0*_maxna0.30_t0.5_informative.rds:
RDS file for import into R; contains a list that stores crossover intervals for each informative meiosis

glmfemalegenome_bychrom.rds:
RDS file for import into R; list of 18 data frames (one for each chromosome) listing the number of crossovers detected in each informative mother-offspring pair

glmfemalegenome_bychrom.rds:
RDS file for import into R; list of 18 data frames (one for each chromosome) listing the number of crossovers detected in each informative father-offspring pair

meanDoseGlaz_250Kwindows_AllPops_31519.rds:

meanDoseGlaz_250Kwindows_AllPops_31519.rds:
RDS file for import into R; dosage status for Manihot Glaziovii allele for informative parents (for introgression analysis)

parents_gbsID_50219.rds:
RDS file for import into R; associated GBS ID for informative parents (for introgression analysis)